| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,639,869 | A→G | 6.8% | L94L (TTA→CTA) | gntR ← | gluconate operon transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,639,869 | 0 | A | G | 6.8% | 163.6 / 2.9 | 59 | L94L (TTA→CTA) | gntR | gluconate operon transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (28/27); new base G (2/2); total (30/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
AAATTCAAAGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGAACGACTCACATTAA > CP000730/2639729‑2640009 | aaaTTCAAAGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTaa < 1:314459/141‑1 (MQ=255)aaaTTCAAAGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTaa < 1:331203/141‑1 (MQ=255) aaTTCAAAGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAAc < 2:79521/141‑1 (MQ=255) aaTTCAAAGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAAc < 2:308221/141‑1 (MQ=255) tCAAAGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTGCGAGGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATc > 1:255226/1‑141 (MQ=255) aaaGTCATGCTTCGTAAATGATTCTGCATCTTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATAGGTAGTCTCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAGCATCAg > 1:333188/1‑141 (MQ=255) aaGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGt > 2:390686/1‑141 (MQ=255) gTCATGCGTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCg < 1:438580/141‑1 (MQ=255) cATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCa > 2:209959/1‑141 (MQ=255) cTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATc > 2:184722/1‑141 (MQ=255) cTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGAAAATGACTCTAACATCAGTCGCAAATc > 1:189130/1‑141 (MQ=255) aaaTGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACAt > 1:378643/1‑141 (MQ=255) tGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCCAATCATACAtttc < 1:109893/141‑1 (MQ=255) tGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACAtttc > 2:152989/1‑141 (MQ=255) gATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACAtttct > 2:145100/1‑141 (MQ=255) tCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTATTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACAtttctttc > 1:270067/1‑141 (MQ=255) cTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTg > 1:369522/1‑141 (MQ=255) tCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGt < 2:325881/141‑1 (MQ=255) ttttACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTcccc < 2:142700/141‑1 (MQ=255) ttttACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTcccc < 2:288426/141‑1 (MQ=255) ttttACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTcccc > 2:298747/1‑141 (MQ=255) tttACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCa < 2:308863/141‑1 (MQ=255) tACTGCCACTTTTATCTTTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCaaa < 1:367854/141‑1 (MQ=255) cTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAaca < 1:202000/141‑1 (MQ=255) cTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTCCTTTCTTTTCTTGTTCCCCAAACGGCAaca < 1:380075/141‑1 (MQ=255) catcatTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACAtg > 1:290600/1‑141 (MQ=255) atTTCAAGTTGTTTCTTCGTTTCTTTTACGATAGGTAGTCTCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAGCATCAGTCGCAAATCGTACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTTCa > 2:333658/1‑141 (MQ=255) ttCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCAcc < 2:181476/141‑1 (MQ=255) gttTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCAttcttt < 2:59797/141‑1 (MQ=255) gttTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCAttcttt < 1:33890/141‑1 (MQ=255) tcttcATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTa > 1:313566/1‑141 (MQ=255) cATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTg > 1:77199/1‑141 (MQ=255) ttACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGtt < 1:50730/141‑1 (MQ=255) ttACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGtt > 1:32907/1‑141 (MQ=255) ttACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGtt > 1:32878/1‑141 (MQ=255) ttACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGtt < 1:440743/141‑1 (MQ=255) ttACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGtt > 1:99609/1‑141 (MQ=255) aCGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGa > 1:86979/1‑141 (MQ=255) aCGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGa > 1:326290/1‑141 (MQ=255) aCGATAGGTAGTCTCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAGCATCAGTCGCAAATCGTACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGa < 2:89668/141‑1 (MQ=255) cGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGAt < 1:104953/141‑1 (MQ=255) cGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGAt < 1:390686/141‑1 (MQ=255) cGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGAt < 1:105068/141‑1 (MQ=255) gTAGTCTCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAGCATCAGTCGCAAATCGTACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCAATTCTTAATAGTTGGATGAGTTGATTttgtt < 1:333658/141‑1 (MQ=255) aGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGc > 1:424012/1‑141 (MQ=255) ctctTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCaataa < 1:187115/141‑1 (MQ=255) gATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTaa < 2:340303/141‑1 (MQ=255) gATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTaa < 2:340330/141‑1 (MQ=255) aaCTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACTTTTCTTTCTTTTCTTGTTCCCCAAACGTCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCAtc > 2:92930/1‑141 (MQ=255) aaCTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCAtc < 1:6432/141‑1 (MQ=255) aaCTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCAtc > 1:61416/1‑141 (MQ=255) aaCTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCAtc < 1:77091/141‑1 (MQ=255) aCTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCAtct > 1:92885/1‑141 (MQ=255) aCTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCAtct > 2:356983/1‑141 (MQ=255) ctctTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCAtctc > 1:57664/1‑141 (MQ=255) ttGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGaa < 1:210151/141‑1 (MQ=255) tGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGa > 1:346166/1‑141 (MQ=255) gCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGaa > 2:19544/1‑141 (MQ=255) cAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTCGCAATAATTTAAATGCATCTCGAATTGGCGAAc > 2:345162/1‑141 (MQ=255) aTGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGAACGAc < 1:52308/141‑1 (MQ=255) gACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGAACGACTc < 1:37673/141‑1 (MQ=255) aaCATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGAACGACTCACATTa < 2:274034/141‑1 (MQ=255) aCATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGAACGACTCACATTaa < 1:288046/141‑1 (MQ=255) aCATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGAACGACTCACATTaa < 2:139952/141‑1 (MQ=255) | AAATTCAAAGTCATGCTTCGTAAATGATTCTGCATCCTCAAATTTTACTGCCACTTTCATCATTTCAAGTTGTTTCTTCATTTCTTTTACGATGGGTAGTCGCTCTTGATTTTTAACTCTTGAAAATGCAAATGACTCTAACATCAGTCGCAAATCATACATTTCTTTCTTTTCTTGTTCCCCAAACGGCAACACATGTGCACCCATTCTTTCTAATTGGATGAGTTGATTTTGTTGCAATAATTTAAATGCATCTCGAATTGGCGAACGACTCACATTAA > CP000730/2639729‑2640009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |