New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2457361 =64 (1.250)4 (0.090) 3/254 4.9 7.8% intergenic (+40/+90) USA300HOU_2317/USA300HOU_2318 hypothetical protein/hypothetical protein
?CP000730 2457434 = 37 (0.800)intergenic (+113/+17) USA300HOU_2317/USA300HOU_2318 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAAAATCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGA  >  CP000730/2457222‑2457501
                                                                                                                                           |                                                                                                                                            
aCAAAATCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTcaaaacaa                                                                                                                                             >  1:520943/1‑141 (MQ=255)
aCAAAATCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTcaaaacaa                                                                                                                                             >  1:456900/1‑141 (MQ=255)
 cAAAATCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTcaaaacaaa                                                                                                                                            >  1:189686/1‑141 (MQ=255)
 cAAAATCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTcaaaacaaa                                                                                                                                            >  2:459211/1‑141 (MQ=255)
    aaTCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAg                                                                                                                                         <  1:326415/141‑1 (MQ=255)
    aaTCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAg                                                                                                                                         <  1:268383/141‑1 (MQ=255)
           atatGTTACGATAAGCACTAAACAAAACAATTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAAAAAAAAAAAAAAAAAAGGAATCaa                                                                                                                                  <  2:96542/141‑1 (MQ=255)
            tatGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAAc                                                                                                                                 >  1:555845/1‑141 (MQ=255)
              tGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACtt                                                                                                                               >  2:441537/1‑141 (MQ=255)
              tGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACtt                                                                                                                               >  1:511040/1‑141 (MQ=255)
              tGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACtt                                                                                                                               >  2:206785/1‑141 (MQ=255)
              tGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACtt                                                                                                                               >  2:497601/1‑141 (MQ=255)
              tGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTAAAGACAAAAAGGAATCAACtt                                                                                                                               >  1:149084/1‑141 (MQ=255)
                ttACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTac                                                                                                                             <  1:45772/141‑1 (MQ=255)
                ttACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTac                                                                                                                             <  2:270029/141‑1 (MQ=255)
                      tatGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCg                                                                                                                       >  2:363222/1‑141 (MQ=255)
                         gCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGttt                                                                                                                    >  1:286899/1‑141 (MQ=255)
                          cACTAAACAATCCATTTCTGTCACCAACAAGCCGCGATAAACTTCAAAGAATGTATAACAGAACCTTGAAATAATTACCTTTCATTATAAGTTTTAAATGAACNTTTNAAAANAAAAAGGAATNAACTTACACATCGTTTg                                                                                                                   <  1:350859/141‑1 (MQ=255)
                          cACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTg                                                                                                                   <  1:7434/141‑1 (MQ=255)
                          cACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTg                                                                                                                   <  1:422307/141‑1 (MQ=255)
                          cACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTg                                                                                                                   <  1:225159/141‑1 (MQ=255)
                           aCTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGt                                                                                                                  >  2:328516/1‑141 (MQ=255)
                           aCTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGt                                                                                                                  >  2:91031/1‑141 (MQ=255)
                             tAAACAATTCATCTTTGGTTCCAACAATACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGGTTTAAATTAACTTAATAAAACAAAAAGGAATCAACTTACACATCGTTTGtat                                                                                                                <  2:565122/141‑1 (MQ=255)
                             tAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGtat                                                                                                                <  1:320276/141‑1 (MQ=255)
                             tAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGtat                                                                                                                <  1:399101/141‑1 (MQ=255)
                                       ataacTGTCACCAACAAGACGCGATACACTTCCAAAAATGTATCACAAAACATTGAAATAATTACCTTTCATTATAAGTCTTAAACGACCTTTTCAAAACAAAAAGGCATCAACTTACACATGGCTTCTATAATCGTCTTa                                                                                                      >  2:450379/5‑141 (MQ=255)
                                       aTTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTa                                                                                                      >  2:563674/1‑141 (MQ=255)
                                       aTTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTa                                                                                                      >  1:3681/1‑141 (MQ=255)
                                       aTTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTa                                                                                                      >  2:518256/1‑141 (MQ=255)
                                       aTTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTa                                                                                                      >  1:221472/1‑141 (MQ=255)
                                       aTTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTa                                                                                                      >  1:30803/1‑141 (MQ=255)
                                       aTTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTCTGTATAATAGTCTTa                                                                                                      >  1:470687/1‑141 (MQ=255)
                                         ttCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATc                                                                                                    <  1:426675/141‑1 (MQ=255)
                                                aCCAACAAGACGCGATAAACTTCAAATAATGTATAACAGAACATTGAAATAATTTCCTTTCATTATAAGTGTTAAATGAACATTAAAAAAAAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAAcc                                                                                             <  2:451454/141‑1 (MQ=255)
                                                 ccAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTAAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCa                                                                                            <  2:456900/141‑1 (MQ=255)
                                                 ccAACAAGACGCGATAAACAAAAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCa                                                                                            <  2:520943/141‑1 (MQ=255)
                                                   aacaaGANGTGATAAACTTCAAAAAAGGTATATCAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGTAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACt                                                                                          <  2:425939/141‑1 (MQ=255)
                                                   aacaaGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAAGAGTCTTATCTATAACCACt                                                                                          <  1:123612/141‑1 (MQ=255)
                                                            cgATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTAtt                                                                                 >  2:499318/1‑141 (MQ=255)
                                                            cgATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTAtt                                                                                 >  1:187819/1‑141 (MQ=255)
                                                            cgATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTAtt                                                                                 >  1:122582/1‑141 (MQ=255)
                                                            cgATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTGGTATAATAGTCTTATCTATAACCACTGATGCTAtt                                                                                 >  2:497449/1‑141 (MQ=255)
                                                            cgATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGAAATAAACTTACACATCGTTTGTATAATAGTCTTATCTATAACAACTGATGCTAtt                                                                                 >  1:52809/1‑141 (MQ=255)
                                                              aTAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGa                                                                               <  1:410602/141‑1 (MQ=255)
                                                              aTAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGa                                                                               <  1:187042/141‑1 (MQ=255)
                                                              aTAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGa                                                                               <  1:379775/141‑1 (MQ=255)
                                                                 aaCTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTc                                                                            >  2:374897/1‑141 (MQ=255)
                                                                    ttCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCtt                                                                         <  2:62603/141‑1 (MQ=255)
                                                                           aaTGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATg                                                                  <  2:121440/141‑1 (MQ=255)
                                                                             tGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGtt                                                                >  1:146827/1‑141 (MQ=255)
                                                                              gTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACGACTGATGCTATTGATTCCTTTTTTATGTta                                                               <  2:511040/141‑1 (MQ=255)
                                                                              gTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTta                                                               <  1:497601/141‑1 (MQ=255)
                                                                              gTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTta                                                               <  1:441537/141‑1 (MQ=255)
                                                                                      gAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATAtttt                                                       <  1:363222/141‑1 (MQ=255)
                                                                                                             aTTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTaa                                >  1:121726/1‑141 (MQ=255)
                                                                                                                ataAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTTATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAatga                             <  2:358224/141‑1 (MQ=255)
                                                                                                                  aaGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAatgatg                           >  1:136243/1‑141 (MQ=255)
                                                                                                                  aaGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAatgatg                           >  1:46179/1‑141 (MQ=255)
                                                                                                                  aaGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAatgatg                           >  1:61243/1‑141 (MQ=255)
                                                                                                                    gtgtTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTc                         <  1:389163/141‑1 (MQ=255)
                                                                                                                                cTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGAt             <  2:555845/141‑1 (MQ=255)
                                                                                                                                       aaacaaaaAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTc      <  1:374897/141‑1 (MQ=255)
                                                                                                                                          caaaaAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGa  <  1:459211/141‑1 (MQ=255)
                                                                                                                                           aaaaaGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGa  <  2:189686/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
ACAAAATCAAGATATGTTACGATATGCACTAAACAATCCATTTCTGTCACCAACAAGACGCGATAAACTTCAAAAAATGTATAACAGAACATTGAAATAATTACCTTTCATTATAAGTGTTAAATGAACTTTTCAAAACAAAAAGGAATCAACTTACACATCGTTTGTATAATAGTCTTATCTATAACCACTGATGCTATTGATTCCTTTTTTATGTTATATATTTTCTTTATTTCAAACTGTATATTAATGATGTCACTTCATTTGATACGATTCTTGA  >  CP000730/2457222‑2457501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.