New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	368774 =	75 (1.130)	4 (0.060)	4/256	8.4	5.5%	intergenic (+208/+70)	nagC/USA300HOU_0337	possible transcriptional regulator/possible RpiR family transcriptional regulator
	?	CP000730	368825 =	64 (1.000)					intergenic (+259/+19)	nagC/USA300HOU_0337	possible transcriptional regulator/possible RpiR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCATTTATTAGAAAATACGAATCTGAGTCAAACTTATCAACATACTAAATCTATTATCCTAGACAACAAATAACTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/368916‑368774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtgGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAATTTGTGTGTTGA  >  CP000730/368825‑368962                                                                                                                                                                                                                                                                                           TCATTTATTAGAAAATACGCATCTGAGTCAAACTTATCAACATACTAAATCTATTATCCTAGACAACAAATAACTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGCTTGTCCCAACGAGTTGCTAGG                                                                                                                                              >  1:549187/1‑141   ATTTATTAGAAAATACGAATCTGAGTCAAACTTATCAACATACTAAATCTATTATCCTAGACAACAAATAACTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTG                                                                                                                                            <  2:484077/141‑1   ATTTATTAGAAAATACGAATCTGAGTCAAACTTATCAACATACTAAATCTATTATCCTAGACAACAAATAACTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTG                                                                                                                                            <  2:721215/141‑1                                                                      ATAACTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTG                                                                                                                                            >  1:7031/1‑74                                                                      ATAACTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTG                                                                                                                                            <  2:7031/74‑1                                                                                                      CTGTAGACAATCATCGTGATTGTCCCAACGATTTGCTAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCA                                         >  2:638594/1‑141                                                                                                      CTGTAGACAATCATCGCGATTGTCCCAACGATTTGCTAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCA                                         <  1:638594/141‑1                                                                                                       TGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATT                                                                   <  2:78084/114‑1                                                                                                       TGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATT                                                                   >  1:78084/1‑114                                                                                                                                            GGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAATTTGTGTGTTG   <  1:2178/141‑1                                                                                                                                             GTGGATTTGAATATACTACTAGTTAGTTGTTGTCTAGGATAATAGAATTAGTATGTTGATAAGTTTGACCCAGAATCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTGGCAATTTGTGTGTTGA  >  2:499038/1‑141                                                                                                                                                                                                                                                                                           TCATTTATTAGAAAATACGAATCTGAGTCAAACTTATCAACATACTAAATCTATTATCCTAGACAACAAATAACTAGTAGTATATTCAAATCCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/368916‑368774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtgGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAATTTGTGTGTTGA  >  CP000730/368825‑368962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.