| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 515519 | NA (NA) | 7 (0.110) | 6/256 | 7.3 | NA | noncoding (814/2921 nt) | rrl1 | 23S ribosomal RNA |
| ? | CP000730 | = 515584 | NA (NA) | noncoding (879/2921 nt) | rrl1 | 23S ribosomal RNA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AGCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/515375‑515519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA < CP000730/515584‑515445 AGCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACT < 2:180575/141‑1AGCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACT > 2:241791/1‑141 GCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTG > 1:574179/1‑141 GCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTG < 1:540128/141‑1 GCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTG < 1:48011/141‑1 GCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTG < 1:132163/141‑1 GCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTG < 1:743657/141‑1 GCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTG < 1:447165/141‑1 GCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACGTACGTTGAAAAGTGAGCGGATGAACTG < 2:745090/141‑1 GCGAAAGCGAGTCTGAATAGGGCGTCTAGTATTTGGTCGTAGAACCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTG > 2:71869/1‑141 CGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGA > 2:580055/1‑141 GAAAGCGAGTCTTAATATGGTGTTTAGTATTTGGTCGTATACCCGAAACCAGGTGTTCTACCCTTGGTCAGGTTGAAGGTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG < 2:242873/141‑1 GAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG > 1:15525/1‑141 GAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG < 1:322530/141‑1 GAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG < 1:263385/141‑1 AAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAGG < 1:411570/141‑1 AGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAGGCTAGCCCTAAAGCTA > 1:135704/1‑141 GGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG > 2:564008/1‑123 GGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG < 1:564008/123‑1 TAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG > 2:79510/1‑104 TAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAG < 1:79510/104‑1 TGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCT < 2:54445/141‑1 GTCAGGTTGAAGTTCAGGTAAGACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGGGCGGATGAACTGAGGCTAGCCCTAAAGCTATTTCGGAGAGAGCCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTAC < 2:68106/141‑1 GTCAGGTTGAAGTTCAAGTAACACTACACGGAGGACCGAACCGACTTACGTAGAACAGTGAGCGGATGAACTGAGGCTAGCCCTAAAGATACTTCGGAGAGAACCACCTATCTCCAGGTTCGATTGGAATTTCTCCGCTAC < 2:783072/141‑1 CAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCC < 2:135704/141‑1 AGGTTGAAGTTCAGGTAACACGGAAGGGGGGGCCGATGCGACGTACGTTGAAAAGTGAGCGGATGAACTGAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCT < 1:625332/141‑1 taAACTGGGGCTAGCTCGAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACT < 2:29057/139‑1 ttagGGCTAG‑CCTCAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGATCGGTCCTCCATTCAGTGTTACCTGAACTTCAAC > 1:733283/5‑141 TGAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAAC < 1:99492/141‑1 GAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACC < 1:762528/141‑1 GAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACC < 1:787485/141‑1 GAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACC < 2:520063/141‑1 GAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAA > 2:614380/1‑100 GAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAA < 1:614380/100‑1 AGGCTAGNCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTGCATTCAGTGTTACCTGAACTTCAACCT < 2:595608/141‑1 AGGCTAGCCCTAAAGTAATTTCGTAGAGAACCAGCGATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCTTCCAGTGTTACCTGAACTTCAACCT > 2:164498/1‑141 AGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCCGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCT < 2:471294/141‑1 AGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCT < 1:615679/141‑1 AGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCT < 2:312250/141‑1 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTG < 2:288154/141‑1 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTG < 2:132774/141‑1 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTG < 2:7828/141‑1 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTG < 1:762873/141‑1 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTG > 2:507300/1‑141 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTG < 2:297120/141‑1 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTG > 1:264596/1‑141 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACC < 1:169913/139‑1 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACC > 2:169913/1‑139 GGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCCGAACTTCAACCTG > 1:143832/1‑141 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCGTTCAGTGTTACCTGAACTTCAACCTGA < 2:415282/141‑1 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCCGAGTTACCTGAACTTCAACCTGA > 1:408135/1‑141 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA > 2:590862/1‑141 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA < 1:487601/141‑1 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA > 2:502539/1‑141 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA < 1:349032/141‑1 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA < 1:560101/141‑1 GCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA > 1:189882/1‑141 AGCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGTGAGCGGATGAACTGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/515375‑515519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAGGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGTAAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGA < CP000730/515584‑515445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |