New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1442900 =	NA (NA)	4 (0.080)	3/246	NT	NA	intergenic (+133/+135)	telA/USA300HOU_1341	tellurite resistance protein/IS1272 transposase
	?	CP000730	1442915 =	NA (NA)					intergenic (+148/+120)	telA/USA300HOU_1341	tellurite resistance protein/IS1272 transposase

ATTACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAAC  >  CP000730/1442768‑1443029                                                                                                                                     |                                                                                                                                  aTTAAGAATTAGATATAAAAAAAAATAGCTTGTGACATTAAGTTTCTTAAAGTTCTTAGGCAATGTAAAAAAGGTGTTTACTATAATGTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGt                                                                                                                            <  1:126541/140‑1 (MQ=18)  ttACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGtt                                                                                                                           <  2:91778/140‑1 (MQ=255)   tACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAAGCAGCTTTTTTGCTATGTATTTTATAATGTACAGCTCGTTg                                                                                                                          >  2:544766/1‑140 (MQ=255)        aTTAGAGAAAAAAAAAAAGAGTCTGGGACATTAAGTTCCTTAAAGTTCTTAGGAAAAGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAgctg                                                                                                                     <  2:85886/140‑1 (MQ=17)               ataACAAAAAAGAGCTTGGGACATTAAGTTCCTTATAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATATTGTACAGCTCGTTGAGCTGCTAtttt                                                                                                              >  1:356796/1‑140 (MQ=255)                 aaCAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTcc                                                                                                            >  1:260289/1‑140 (MQ=255)                    aaaaaaGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTta                                                                                                         >  1:592964/1‑140 (MQ=255)                    aaaaaaGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTta                                                                                                         >  2:641362/1‑140 (MQ=255)                      aaaaGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATATCTATTATTTATTTGATAGAAATCAGCTTATTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTtata                                                                                                       >  1:593849/1‑140 (MQ=255)                           agCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTTTATTAAg                                                                                                  >  1:465927/1‑140 (MQ=255)                                gggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTTTTTGCTAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACACCTCGTTGAGCTGCTATTTTCCTTATATTATCTGCCa                                                                                             >  1:303767/1‑140 (MQ=14)                                gggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCa                                                                                             >  2:629253/1‑140 (MQ=255)                                 ggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAt                                                                                            >  2:567748/1‑140 (MQ=255)                                 ggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAACTTTTTTGCTATGTATTTTGAGTTTAACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAt                                                                                            >  1:50812/1‑140 (MQ=14)                                  gACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTTTTTCACTTAAAGCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAtt                                                                                           <  1:317276/140‑1 (MQ=14)                                  gACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAtt                                                                                           >  1:195175/1‑140 (MQ=255)                                         aGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACaa                                                                                    >  2:313585/1‑140 (MQ=40)                                                      tCTTAGGCAATGTAAAACAGCTCCTTTCTATTATTTATTTGATAGAAATCAGCTTTTTTTATATGGATTTTATAATTTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCg                                                                       <  2:627851/140‑1 (MQ=11)                                                       cTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGt                                                                      <  1:488674/140‑1 (MQ=33)                                                       aatatgCAATGTAAAAAATCTTAATTATAATATTTATTTTATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTACCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGt                                                                      <  1:283619/135‑1 (MQ=11)                                                         tAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGttt                                                                    >  2:602912/1‑140 (MQ=33)                                                         tAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGttt                                                                    <  2:370120/140‑1 (MQ=33)                                                          aGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTa                                                                   >  2:447606/1‑140 (MQ=33)                                                                    aaaaaGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATAGAAAACCTAGCTCTCGTTTAACtttattta                                                         >  2:422794/1‑140 (MQ=18)                                                                    aaaaaGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACtttattta                                                         >  1:565422/1‑140 (MQ=33)                                                                    aaaaaGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACtttattta                                                         >  1:250377/1‑140 (MQ=33)                                                                              tttCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAAc                                               >  1:442919/1‑140 (MQ=33)                                                                              tttCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAAc                                               >  1:133121/1‑140 (MQ=33)                                                                                      atttatttGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTc                                       <  1:453699/140‑1 (MQ=31)                                                                                      atttatttGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTc                                       <  2:426552/140‑1 (MQ=31)                                                                                                                           ttttaATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAAc  <  2:468708/137‑1 (MQ=1)                                                                                                                                     |                                                                                                                                  ATTACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAAC  >  CP000730/1442768‑1443029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.