New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52495 =83 (0.900)123 (1.350)
+T		 7/258 NT 59.6% intergenic (+105/‑568) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52988 85 (0.930)intergenic (+598/‑75) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator

Only 100 of 245 total aligned reads displayed.

TTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA  >  CP000730/52355‑52633
                                                                                                                                            |                                                                                                                                          
taaaccatcgtagtaattgtgcgaaaatcccgtgaaataaccagaggaatcgtttgaaatcatcgtagtaatcgcgtgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcac                                                                                                                                            >  2:926360‑M1/141‑141 (MQ=255)
 tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCGGGAGTTTGTAGTCTTAATCTTTCGTAAAGACGAGAATAGTTGTGGAAATcgct                                                                                                                                           >  1:499375/1‑140 (MQ=255)
   ttttttAAAGCATTAAATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                                                                         <  1:275286/141‑1 (MQ=255)
     ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa                                                                                                                                       <  2:573236/141‑1 (MQ=255)
      tttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                                                                      <  1:940757/141‑1 (MQ=255)
       ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat                                                                                                                                     >  1:978422/1‑141 (MQ=255)
       ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat                                                                                                                                     <  1:531520/141‑1 (MQ=255)
         aaaGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaataa                                                                                                                                   >  1:694123/1‑141 (MQ=255)
          aaGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaataat                                                                                                                                  >  1:558273/1‑141 (MQ=255)
            gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                                >  2:1022566/1‑141 (MQ=255)
            gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                                >  1:1005340/1‑141 (MQ=255)
               ttAGATGTCGTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                                                                             <  1:105408/141‑1 (MQ=255)
               ttAGATGCCTTAAAGAAATAGTTTTTCAATGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGTGTGAAATAATCagag                                                                                                                             <  2:9914/141‑1 (MQ=255)
                            aGAAATAGTTTTTCGCTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                                                                                >  1:575871/1‑141 (MQ=255)
                             ccgtgaaatcaacggaggaaacgtttgtaagcatcgtagtaatcgcgcgcaaatcccgtgaaataatcagagcaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAat                                                                                                               >  1:979719‑M1/112‑141 (MQ=255)
                               aaTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAaaca                                                                                                             >  2:708882/1‑141 (MQ=255)
                                   atttttCACTGAAAATATTTATAAATATAAATAAAATTAAATAAAATAAAGCCAGGATAATGTAGTCCTAAACGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCATAGGAATCGTTTGAAATCATCgt                                                                                                         <  2:547162/140‑1 (MQ=38)
                                                   ttttataaatcatattaacattaaTCAATATTAAGCCAGGATACTGCAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCCCGTGAAATAATCCGAGGAATCGTTTGAAATCATCGTAGTAAACGCGCGgaaa                                                                                         <  2:838336/128‑1 (MQ=25)
                                                       ataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGACATCATCGTAGTAATCGCGCGGAAGTCag                                                                                     >  2:301682/1‑140 (MQ=255)
                                                       ataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                                                                                     >  1:425746/1‑141 (MQ=255)
                                                       ataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGTAGTAATCGCGCGAAAATCAc                                                                                     >  1:39122/1‑141 (MQ=255)
                                                            tataATTAAAATTAATTAACATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGATTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                                >  1:719525/1‑141 (MQ=255)
                                                             atcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgCGTGAAATAATAAGAGGAATGGTTTGAAAAAATCGAAGTAATCGCGCGAAAATCACGGGaaa                                                                               <  2:1072550‑M1/62‑1 (MQ=255)
                                                                  taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                                                                          <  2:177431/141‑1 (MQ=255)
                                                                      attaattaATATTAAGACAGGATGATGGTGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCAGCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag                                                                      <  2:225750/141‑1 (MQ=25)
                                                                       ttaattaaTAATAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg                                                                     <  2:908285/141‑1 (MQ=255)
                                                                          attaatATTAAGCCAGAATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                                                                  >  1:548424/1‑141 (MQ=255)
                                                                            ggaaaatcgcgtgaaataatcagaggaatcctttgaaaacatcggagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg                                                                >  2:981014‑M1/65‑141 (MQ=255)
                                                                               aaatcccgtgaaataatcatacgaaacgtttgaacacaccatagaaatctcgcgaaaatcaCGTGAAATAATCAGAGAAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                             >  2:497883‑M1/62‑141 (MQ=255)
                                                                                 aaaagatgaaataatcaggtgaaacatttaaaaatatagtaaaaatggcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa                                                           >  2:100720‑M1/60‑141 (MQ=255)
                                                                                  tcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                          <  1:916845‑M1/83‑1 (MQ=255)
                                                                                    aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat                                                        <  1:193501/141‑1 (MQ=255)
                                                                                     cgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGa                                                                                                                  <  1:924357‑M1/27‑1 (MQ=255)
                                                                                     cgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                                                                             >  1:598242‑M1/56‑103 (MQ=255)
                                                                                      gtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                                                                                 <  2:347211‑M1/44‑1 (MQ=255)
                                                                                       tgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                                                                           <  1:341781‑M1/34‑1 (MQ=255)
                                                                                            tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGCCATTCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                >  1:203280/1‑141 (MQ=255)
                                                                                            tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                >  1:839981/1‑141 (MQ=255)
                                                                                            tAATGTAGTCATAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                >  1:801294/1‑141 (MQ=255)
                                                                                             aaTGTAGTCTTAGTCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATAGTAGTAATCGCGCGGAAAACACGTGAAATAATAAGAGGAATCGTATGAAATAAtagtaga                                               >  1:571173/1‑140 (MQ=18)
                                                                                              atcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAatc                                                                                                              >  2:629196‑M1/47‑77 (MQ=255)
                                                                                              aTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta                                              >  1:430501/1‑141 (MQ=255)
                                                                                                      ttAATCGTTCTGAAATACAAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                      <  1:982247/141‑1 (MQ=255)
                                                                                                      aatcgtttgaaataatagtagaaatcgagtaaaaatcaGGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAACAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                      >  2:719525‑M1/39‑141 (MQ=255)
                                                                                                       atcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagt                                                                                                      >  1:709251‑M1/38‑76 (MQ=255)
                                                                                                       atcgtttgaaatcatcatagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                     <  1:655148‑M1/104‑1 (MQ=255)
                                                                                                        tcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAAGTGAAATAATCAGAGGAAAGGTTTGCAAGCATCGTAGTAATCGCGCGaa                                    <  2:1109574‑M1/105‑1 (MQ=255)
                                                                                                         cgtttgaaatcatcgtagtaatcgcgcgaaaatcaGGTGAAATAATCCGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                   >  2:109130‑M1/36‑141 (MQ=255)
                                                                                                         cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                                                                                        <  1:781506‑M1/37‑1 (MQ=255)
                                                                                                         cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGCGTAGTTTGAAATCAACGTAGTACTCGCGCGaaa                                   <  1:54253‑M1/106‑1 (MQ=255)
                                                                                                         cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                            <  1:469923‑M1/81‑1 (MQ=255)
                                                                                                         cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                   <  1:158328‑M1/106‑1 (MQ=255)
                                                                                                         cgtttgaaatcatcgtagtaatcgagcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCCTCGTAGTAATCGCGCGaaa                                   <  1:704985‑M1/106‑1 (MQ=255)
                                                                                                         aTCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAGTAACGTGAAATAATCAGAGAAATCGTTTGAAATCATCGGAGTAATGGCGCGata                                   >  2:499894/1‑139 (MQ=17)
                                                                                                          gtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                  <  1:1076058‑M1/107‑1 (MQ=255)
                                                                                                           tttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                                                                                 >  2:557994‑M1/34‑93 (MQ=255)
                                                                                                           tttgaaaccaaccgaataatcttgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                 >  2:203280‑M1/34‑141 (MQ=255)
                                                                                                           tttaaaaacatcataaaaatcgcggaaaaatcaCGGGAAATAATCAGAGGAATCGCTTGAAATCATCGAAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                 >  1:993444‑M1/34‑141 (MQ=255)
                                                                                                           cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                 <  1:113739/141‑1 (MQ=255)
                                                                                                            ttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                <  1:109130‑M1/109‑1 (MQ=255)
                                                                                                             tgaaatcatcgtagtaatcgcgcgaaaatccCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGAAATAATCAGTGCGATCGATTGAGATAGTCGTAGTAAGTACGCGAAAAtcc                               <  2:338274‑M1/110‑2 (MQ=255)
                                                                                                             tgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGGATCGTTTGAAATAATCAAAGCAATGACGCGACAATCa                               <  2:254867‑M1/110‑1 (MQ=255)
                                                                                                             tgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATGGCTTGAGATAATCGTAGTAATCGCGCGAAAAtcc                               <  2:977731‑M1/110‑2 (MQ=255)
                                                                                                              taaatcatcgtagaaattgtgtgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATTAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                              >  2:590561‑M1/31‑141 (MQ=255)
                                                                                                              gaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGGGGAATCGTTTGaa                                                          <  2:764291‑M1/83‑1 (MQ=255)
                                                                                                              gaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                          >  1:764291‑M1/31‑113 (MQ=255)
                                                                                                               cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                             >  1:230928/1‑141 (MQ=255)
                                                                                                               aaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGATTTCACCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                             >  1:802979‑M1/30‑141 (MQ=255)
                                                                                                                   catcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                    >  2:137060‑M1/26‑82 (MQ=255)
                                                                                                                   catcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                    <  1:137060‑M1/57‑1 (MQ=255)
                                                                                                                   catcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                    >  1:853464‑M1/26‑82 (MQ=255)
                                                                                                                   catcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                    <  2:943568‑M1/57‑1 (MQ=255)
                                                                                                                    atcgtaataatcttgcgaaaatcaCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTACTCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                        >  2:801294‑M1/25‑141 (MQ=255)
                                                                                                                     tcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                                                                                  >  2:867894‑M1/24‑82 (MQ=255)
                                                                                                                      aagAAAAATGTTGTAGTAATAGCCTAAAATAATCTAAGCAATCGTTTGAAATCATCCTAATAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                      <  2:39122/139‑1 (MQ=11)
                                                                                                                      aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                      <  2:425746/141‑1 (MQ=255)
                                                                                                                       gtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                 >  2:815123‑M1/22‑49 (MQ=255)
                                                                                                                       gtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                            >  2:979366‑M1/22‑70 (MQ=255)
                                                                                                                       gtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                            <  1:1016300‑M1/49‑1 (MQ=255)
                                                                                                                          gtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                        >  2:382422‑M1/19‑119 (MQ=255)
                                                                                                                          gtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                        <  1:382422‑M1/101‑1 (MQ=255)
                                                                                                                               cgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAGGTGAAATAATCAGAGGAATCGGTTGAAATCATCGAAGTAATAGCGCGAAAATCCCGTGAAAGAATCAGGGGa             <  2:533802‑M1/128‑1 (MQ=255)
                                                                                                                                 tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAGCGCGTGAAAGTTCCGTGAAATAATCAGAGGaaa           >  1:926494/1‑140 (MQ=11)
                                                                                                                                  gcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                            <  1:890083‑M1/113‑1 (MQ=255)
                                                                                                                                  gcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGAAGTAATCGCGCGAAAGTCACGTGAGATAATCAGAGGAATCGTTTGAAATCAACGTAGTAATCGCGCGAAAGTCTCGTCAGATAATcagaggcgtc          <  1:177621‑M1/131‑5 (MQ=255)
                                                                                                                                   cgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGa                                                                                                                  <  1:1015356‑M1/27‑1 (MQ=255)
                                                                                                                                   cgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                        >  1:524776‑M1/10‑62 (MQ=255)
                                                                                                                                   cgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                        <  2:524776‑M1/53‑1 (MQ=255)
                                                                                                                                   cgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                            <  1:316069‑M1/81‑1 (MQ=255)
                                                                                                                                   cgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAGCGTTTg                                                            >  2:611748‑M1/10‑90 (MQ=255)
                                                                                                                                      aaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                            <  1:683636‑M1/81‑1 (MQ=255)
                                                                                                                                      aaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt      <  2:688375‑M1/135‑1 (MQ=255)
                                                                                                                                       aatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                    <  2:1003294‑M1/89‑1 (MQ=255)
                                                                                                                                       aatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg     <  1:623951‑M1/136‑1 (MQ=255)
                                                                                                                                       aatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGAGGAATCGTTTg     <  1:949490‑M1/136‑1 (MQ=255)
                                                                                                                                        atcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa    <  1:583977‑M1/137‑1 (MQ=255)
                                                                                                                                         tcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                            <  1:452240‑M1/81‑1 (MQ=255)
                                                                                                                                         tcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAGTAAGAGGAATGGTTTGaa   <  2:1029140‑M1/138‑1 (MQ=255)
                                                                                                                                         tcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAACGCGCGAAAATCACGTGAAATAAACAGAGGAATCGATTGaa   <  2:588679‑M1/138‑1 (MQ=255)
                                                                                                                                           aCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                        <  1:957035‑M1/117‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                          
TTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA  >  CP000730/52355‑52633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.