| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 200412 | 130 (0.950) | 3 (0.020) | 3/514 | NT | 2.1% | intergenic (+52/‑70) | bamA/skp | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor/periplasmic chaperone |
| ? | NC_000913 | = 200419 | 159 (1.200) | intergenic (+59/‑63) | bamA/skp | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor/periplasmic chaperone | |||||
ATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATATGGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/200107‑200412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgatcTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACCCATATCCCAGAAGAAGGAAGTACGAACCGAG < NC_000913/200419‑200120 atcatTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATATGGGTACCGTTTGGGATACAAACTTGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGGCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAATGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGG < 2:875028/296‑1 AAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATATGGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCCGTTTAACCTCGGTAAAACCTGGTAAGTGTTCTCCAACAAGGACTGTAGTGGAAGTGTAGCACTGACTTTAGGCG > 2:183636/1‑301 GTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATATGGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGACCAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAa > 1:288796/1‑300 GTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATATGGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTACCATCGGTAAACCATGGTAAGTGTTCTCCACAACGGAATGTAGTGGTAGTGTAGCGATGACTTTCGGCGAT > 2:724398/1‑301 CCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATC‑AATATAAGCTCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCA > 1:522703/1‑218 CCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATC‑AATATAAGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCA < 2:522710/218‑1 GTAGTGGTAGTGTAGCGATGACTTTAGGCGATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTCGGAGAACACCAACGGCCCCACTGGGGACCTCCATTGTACTGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCCGAATATTGGCTGGAATCCCAGTTTGTATCCCACAC > 2:1171419/1‑296 cccGCGATCTTATAT‑TGATCCCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACCCATATCCCAGAAGAAGGAAGTAC < 1:592968/298‑1 cTCTTATAT‑TGATCTCCTAAAGTCAGCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGGCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACCCA < 2:1211257/273‑1 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTTGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGGCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATC < 1:357637/212‑1 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATCCCCGCAGACATCCGGCTATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGGTTGTATCCCAAACGGTACCCA > 1:1211228/1‑274 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGCTATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACACCTATCCCAGAAGCAGGAAGTACGACCCG > 2:988297/1‑301 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACCCATATCCCAGAAGCAGGAAGTACGAACCG > 2:403594/1‑301 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACCCATATCCCAGAAGAAGGAAGTACGAACCG > 2:246398/1‑301 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACCCATATCCCAGAAGAAGGAAGTACGAACCG > 2:288798/1‑301 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTAT > 2:431445/1‑217 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGG < 1:764298/55‑1 ATCTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGG > 2:764312/1‑55 ATCTTATAT‑TGATCGCATAAAGTCATCGCTAAACTACCACTACATTCCTGTGTGGAGAACACTGACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTAT < 1:431442/217‑1 CTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATAAGGATATTGCTGGGATCACTATAGTCCGGATATCCAGAATAGTGGCTGGAATCCCAGTTTGTATCCCAAACGTTACCCATATCACAGAAAAAGAGAGTACAAACCGAG > 2:1137444/1‑301 ATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATATGGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/200107‑200412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgatcTTATAT‑TGATCGCCTAAAGTCATCGCTACACTACCACTACATTCCTTTGTGGAGAACACTTACCAGGTTTTACCGATGTTAAACTGGAACTGTTCTGCCTTGTCTCCATCGTACTTTTTGAACGGCTGGGCGTAGGAGAACACCAACGGCCCCAATGGGGACATCCATTGTAATGCGATACCCGCAGACATACGGATATTGCTTGGATCACTATAGTCCGGATATCCAGAATATTGGCTGGAATCCCAGTTTGTATCCCAAACGGTACCCATATCCCAGAAGAAGGAAGTACGAACCGAG < NC_000913/200419‑200120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |