Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009134,166,5610A→C100.0% 1.5 2intergenic (+276/‑98)murI/rrsBglutamate racemase/16S ribosomal RNA of rrnB operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (0/0):  total (2/0)

GGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAAT  >  NC_000913/4166289‑4166590
                                                                                                                                                                                                                                                                                |                             
ggTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCCGAGCAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTCTTATGCACACCCCGCGCCGCTGAGAACAAGCGCAGCGGACCTGCTCTTTAACCATTTATCAGACCCACTGTGTGGGACCACGAAGATCCGGATTCTTCAGGTCGCAAGCCGaacaa   >  1:294816/1‑301 (MQ=11)
 gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGCACCACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGCACTCCGGCAGAGAAAGCACAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGACAAAACGAATCAGCACTGCCCTTTAACAGTTTATCAGACAATCTGTGTGGGAACTCGAAGATCCGGATTTTTAACGTCGCaaacccgaaaaa  >  1:222887/1‑291 (MQ=11)
                                                                                                                                                                                                                                                                                |                             
GGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAAT  >  NC_000913/4166289‑4166590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.