mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 45.5% | 7.5 / 24.6 | 24 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 28.0% | 39.7 / 15.5 | 27 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,304 | 0 | A | C | 22.2% | 51.2 / 11.5 | 27 | intergenic (+510/+132) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2383955 | 42 (0.900) | 7 (0.160) | 6/568 | 4.8 | 14.8% | intergenic (+31/+40) | elaD/yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| ? | NC_000913 | = 2383959 | 41 (0.930) | intergenic (+35/+36) | elaD/yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein | |||||
| * | ? | NC_000913 | 1207790 = | 38 (0.820) | 6 (0.140) | 6/566 | 4.8 | 15.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 31 (0.700) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 41 (0.880) | 5 (0.110) | 5/566 | 5.2 | 12.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 30 (0.680) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1418966 = | 58 (1.250) | 3 (0.070) | 3/578 | 6.4 | 5.1% | coding (296/489 nt) | sieB | phage superinfection exclusion protein, Rac prophage |
| ? | NC_000913 | 1418992 = | 56 (1.240) | coding (322/489 nt) | sieB | phage superinfection exclusion protein, Rac prophage | |||||
| * | ? | NC_000913 | = 1377531 | 59 (1.270) | 3 (0.070) | 3/580 | 6.4 | 5.3% | coding (700/1056 nt) | ycjS | putative NADH‑binding oxidoreductase |
| ? | NC_000913 | = 1377657 | 49 (1.090) | coding (826/1056 nt) | ycjS | putative NADH‑binding oxidoreductase | |||||
| * | ? | NC_000913 | 4590277 = | 36 (0.770) | 3 (0.070) | 3/588 | 6.5 | 8.6% | coding (1003/2151 nt) | yjiY | putative transporter |
| ? | NC_000913 | 4590379 = | 28 (0.610) | coding (901/2151 nt) | yjiY | putative transporter | |||||
| * | ? | NC_000913 | = 4492699 | 46 (0.990) | 3 (0.070) | 3/590 | 6.5 | 6.3% | coding (653/765 nt) | idnO | 5‑keto‑D‑gluconate‑5‑reductase |
| ? | NC_000913 | = 4492709 | 44 (0.960) | coding (643/765 nt) | idnO | 5‑keto‑D‑gluconate‑5‑reductase | |||||
| * | ? | NC_000913 | 4448246 = | 47 (1.010) | 3 (0.070) | 3/582 | 6.5 | 6.2% | intergenic (+11/‑201) | ytfP/chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| ? | NC_000913 | 4448266 = | 45 (0.990) | intergenic (+31/‑181) | ytfP/chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system | |||||
| * | ? | NC_000913 | = 4073804 | 64 (1.370) | 3 (0.070) | 3/586 | 6.5 | 4.5% | coding (66/897 nt) | yihV | 6‑deoxy‑6‑sulphofructose kinase |
| ? | NC_000913 | = 4073812 | 66 (1.450) | coding (74/897 nt) | yihV | 6‑deoxy‑6‑sulphofructose kinase | |||||
| * | ? | NC_000913 | = 2830470 | 56 (1.200) | 3 (0.070) | 3/592 | 6.5 | 5.6% | coding (658/966 nt) | srlQ | D‑arabinose 5‑phosphate isomerase |
| ? | NC_000913 | 4327661 = | 45 (0.980) | coding (527/2229 nt) | crfC | clamp‑binding sister replication fork colocalization protein, dynamin‑related | |||||