mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 35.0% | 19.9 / 13.4 | 21 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 21.1% | 62.4 / 10.5 | 39 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 26 (0.620) | 8 (0.200) | 8/566 | 3.5 | 20.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 36 (0.910) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542682 = | 51 (1.220) | 7 (0.170) | 6/580 | 4.3 | 11.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 55 (1.350) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1096961 = | 32 (0.760) | 7 (0.230) | 3/438 | 4.6 | 22.8% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 24 (0.780) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 51 (1.220) | 5 (0.120) | 5/580 | 4.7 | 8.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 55 (1.350) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3209496 = | NA (NA) | 4 (0.100) | 4/580 | 5.2 | NA | intergenic (+9/+34) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
| ? | NC_000913 | 3209522 = | NA (NA) | intergenic (+35/+8) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 4 (0.100) | 4/580 | 5.2 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3145876 | 33 (0.790) | 3 (0.070) | 3/598 | 5.9 | 7.4% | coding (386/1119 nt) | hybO | hydrogenase 2, small subunit |
| ? | NC_000913 | 4307976 = | 42 (1.000) | coding (503/696 nt) | alsE | allulose‑6‑phosphate 3‑epimerase | |||||
| * | ? | NC_000913 | 1941809 = | 50 (1.190) | 3 (0.070) | 3/594 | 5.9 | 5.8% | coding (775/933 nt) | znuA | zinc ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1941856 = | 47 (1.130) | coding (728/933 nt) | znuA | zinc ABC transporter periplasmic binding protein | |||||