mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 205 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,969,794 | 0 | A | C | 60.0% | 0.8 / 18.5 | 20 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 1,413,735 | 0 | A | T | 54.2% | 10.6 / 36.3 | 24 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 354,318 | 0 | T | G | 53.8% | 19.0 / 33.1 | 26 | V538G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 1,823,437 | 0 | C | T | 47.6% | 12.7 / 12.6 | 21 | intergenic (+152/‑78) | nadE/cho | NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair |
| * | NC_000913 | 1,346,653 | 0 | C | A | 45.8% | 24.0 / 11.1 | 24 | L30F (TTG→TTT) | gmr | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of RNase II stability |
| * | NC_000913 | 354,288 | 0 | T | G | 45.7% | 37.4 / 11.6 | 36 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 357,890 | 0 | C | A | 44.4% | 20.6 / 13.3 | 27 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,222,596 | 0 | G | A | 44.1% | 26.7 / 17.2 | 34 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 3,375,123 | 0 | T | G | 44.0% | 149.3 / 17.4 | 85 | G85G (GGT→GGG) | dcuD | putative transporter |
| * | NC_000913 | 4,287,719 | 0 | T | A | 43.5% | 58.1 / 24.5 | 47 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| * | NC_000913 | 2,147,733 | 0 | T | G | 43.4% | 83.3 / 12.0 | 54 | G20G (GGT→GGG) | yegD | Hsp70 chaperone family protein |
| * | NC_000913 | 4,538,109 | 0 | A | C | 43.1% | 73.3 / 19.6 | 51 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 1,825,061 | 0 | G | A | 42.3% | 28.1 / 13.8 | 26 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 506,428 | 0 | A | G | 41.7% | 35.9 / 11.9 | 36 | G505G (GGA→GGG) | ushA | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| * | NC_000913 | 3,350,853 | 0 | A | C | 41.4% | 119.0 / 17.8 | 71 | S725A (TCA→GCA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 589,934 | 0 | T | G | 41.4% | 42.4 / 10.2 | 29 | T341P (ACC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
| * | NC_000913 | 3,350,844 | 0 | A | C | 40.0% | 126.7 / 14.7 | 70 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 4,571,384 | 0 | T | A | 40.0% | 43.3 / 12.6 | 30 | Y64F (TAT→TTT) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| * | NC_000913 | 213,341 | 0 | A | G | 39.6% | 84.9 / 12.6 | 53 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 4,287,710 | 0 | G | A | 39.6% | 59.7 / 21.3 | 48 | intergenic (‑339/‑54) | acs/nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |