| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,824,201 | Δ6 bp | coding (1802‑1807/2109 nt) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3824201 | 3824206 | 6 | 61 [0] | [0] 61 | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3824200 | 0 (0.000) | 61 (0.950) | 59/298 | 0.2 | 100% | coding (1801/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | NC_000913 | 3824207 = | 0 (0.000) | coding (1808/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
CCAAAGCCACGGACATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATGGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCAC > NC_000913/3824055‑3824348 | ccAAAGCCACGGACATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggc > 1:525549‑M1/1‑146 (MQ=255) cAAAGCCACGGACATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggct < 2:605508‑M1/151‑7 (MQ=255) ccACGGACATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctacc > 2:933844‑M1/1‑140 (MQ=255) aCGGACATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaa < 1:32292‑M1/151‑14 (MQ=255) gACATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaaga < 2:846067‑M1/151‑17 (MQ=255) aCATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagag < 1:287329‑M1/151‑18 (MQ=255) cATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagc > 2:266365‑M1/1‑133 (MQ=255) aTCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagcc > 2:337746‑M1/1‑132 (MQ=255) gCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccaga < 1:851047‑M1/150‑23 (MQ=255) gCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccag < 1:397316‑M1/149‑22 (MQ=255) ccATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaa < 1:734796‑M1/151‑26 (MQ=255) ccATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagaga > 1:886555‑M1/1‑126 (MQ=255) ccATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagaga > 2:934300‑M1/1‑126 (MQ=255) cATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagaga > 1:595636‑M1/1‑125 (MQ=255) aGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatg > 2:941388‑M1/1‑119 (MQ=255) gATGGCGCGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAACGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagcccgtgaagtttatggctgtgg > 2:15152‑M1/1‑112 (MQ=255) tGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtgg > 2:836387‑M1/1‑110 (MQ=255) ggCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaat > 1:885439‑M1/1‑109 (MQ=255) ggCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaat < 1:274911‑M1/151‑43 (MQ=255) cGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgg < 2:937061‑M1/151‑45 (MQ=255) cTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggat > 1:700847‑M1/1‑103 (MQ=255) gATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaa < 2:558483‑M1/151‑51 (MQ=255) ccTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGTTCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagtgaagtttatgtctgcggaatgggcgaaag > 2:424268‑M1/1‑96 (MQ=255) ttGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacg < 1:8163‑M1/149‑57 (MQ=255) tGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcg > 1:46374‑M1/1‑92 (MQ=255) aTGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcagg > 1:362511‑M1/1‑86 (MQ=255) ccgccCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatc > 1:896299‑M1/1‑80 (MQ=255) cccTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcacc > 1:914946‑M1/1‑77 (MQ=255) ccTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccg > 1:589179‑M1/1‑76 (MQ=255) cTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccg > 1:584543‑M1/1‑75 (MQ=255) tATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccga > 1:733524‑M1/1‑74 (MQ=255) aTTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaa > 1:708485‑M1/1‑73 (MQ=255) aTTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaa < 1:172980‑M1/150‑78 (MQ=255) ccTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatca < 2:558031‑M1/151‑82 (MQ=255) ccTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatc > 2:382553‑M1/1‑70 (MQ=255) cTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatc > 2:965521‑M1/1‑69 (MQ=255) cTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatc < 1:182480‑M1/149‑81 (MQ=255) gACCCGATTATCGCGCCCGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGTATCCTGCCGTAgtggctacccgaaggagcccgagaagtttatggctgtggtatgggataaagggacggcgcaggagttcatcaccgaaatcaaggcgg > 2:51956‑M1/1‑64 (MQ=255) cccGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagcagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtgg > 2:267608‑M1/1‑62 (MQ=255) cGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagat < 1:862348‑M1/151‑92 (MQ=255) aTCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttc > 2:574019‑M1/1‑55 (MQ=255) cccACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatca < 1:657732‑M1/151‑101 (MQ=255) aGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtg > 1:88319‑M1/1‑43 (MQ=255) aGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtg < 1:22621‑M1/151‑109 (MQ=255) gCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgc < 1:675971‑M1/151‑110 (MQ=255) ccGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgct < 2:818545‑M1/151‑113 (MQ=255) tCTGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctg > 1:846688‑M1/1‑29 (MQ=255) tGGTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgac > 1:646234‑M1/1‑27 (MQ=255) gTGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacgg < 1:898860‑M1/151‑127 (MQ=255) tGATCCACCATGAATCCTGCCGTAgtggctaccagaaagagccagagcagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggc > 2:848623‑M1/1‑24 (MQ=255) caTGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggttaaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcgtcaat < 2:456498‑M1/149‑134 (MQ=255) caTGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaatta < 1:389606‑M1/151‑136 (MQ=255) caTGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaa > 2:447144‑M1/1‑16 (MQ=255) tGAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaattaac > 1:683074‑M1/1‑14 (MQ=255) gAATCCTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaagggggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaattaac > 2:877007‑M1/1‑13 (MQ=255) ccTGCCGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaattaacaccac < 2:886229‑M1/151‑143 (MQ=255) ccTGCCGTAggggctaccagaaagagcaagagaagtttatggctggggaatgggataaagagacggcgcaggagagaatcaccgaaatcaagggggagaggttcaatcaacagggagcgctggcaaacctgacggcggcaattaacacca > 2:506485‑M1/1‑9 (MQ=255) ccGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaattaacaccacgact < 2:733242‑M1/151‑147 (MQ=255) cGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaattaacaccacgactt > 1:792148‑M1/1‑4 (MQ=255) cGTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaattaacaccacgactt > 2:595693‑M1/1‑4 (MQ=255) gTAgtggctaccagaaagagccagagaagtttatggctgtggaatgggataaagagacggcgcaggagttcatcaccgaaatcaaggtggagatgttcaatcatcagggtgcgctggcaaacctgacggcggcaattaacaccacgacttc < 2:602505‑M1/151‑149 (MQ=255) | CCAAAGCCACGGACATCTGCCCATTAAAGGTGCCGATGGCGTGCTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATGGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCAC > NC_000913/3824055‑3824348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |