mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 264 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 941,713 | 0 | T | G | 51.6% | 55.9 / 92.5 | 62 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 4,538,109 | 0 | A | C | 51.4% | 80.9 / 124.2 | 74 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 599,576 | 0 | T | G | 47.4% | 82.7 / 15.2 | 57 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 357,880 | 0 | T | C | 46.8% | 48.2 / 14.8 | 48 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,890 | 0 | C | A | 45.6% | 43.6 / 22.4 | 46 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 354,288 | 0 | T | G | 45.5% | 83.3 / 10.3 | 56 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 2,571,036 | 0 | T | G | 45.5% | 76.4 / 17.0 | 55 | N239T (AAC→ACC) | eutE | aldehyde oxidoreductase, ethanolamine utilization protein |
| * | NC_000913 | 1,825,056 | 0 | G | A | 45.1% | 46.2 / 27.1 | 51 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 802,118 | 0 | A | C | 44.4% | 74.4 / 14.9 | 54 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 4,538,101 | 0 | G | T | 44.4% | 118.0 / 42.5 | 72 | T222N (ACC→AAC) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 2,578,143 | 0 | A | C | 44.1% | 89.2 / 25.0 | 59 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 357,875 | 0 | A | T | 44.0% | 62.7 / 19.3 | 50 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 29,496 | 0 | T | A | 41.5% | 118.1 / 43.4 | 82 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.4% | 79.1 / 44.0 | 70 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,825,061 | 0 | G | A | 41.2% | 61.6 / 22.2 | 51 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 2,678,039 | 0 | T | G | 40.4% | 68.3 / 10.6 | 47 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 3,862,661 | 0 | T | G | 39.5% | 24.0 / 16.0 | 44 | pseudogene (943/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 4,568,512 | 0 | C | A | 39.3% | 98.4 / 19.7 | 61 | R3L (CGT→CTT) | mdtM | multidrug efflux system protein |
| * | NC_000913 | 4,538,111 | 0 | C | T | 39.2% | 95.0 / 33.9 | 74 | G219S (GGT→AGT) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 15,395 | 0 | G | A | 38.9% | 43.3 / 12.5 | 36 | intergenic (+97/‑50) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |