New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2798605	1 (0.010)	77 (1.010)	70/298	0.1	98.7%	intergenic (‑110/‑559)	stpA/alaE	DNA binding protein, nucleoid‑associated/alanine exporter, alanine‑inducible, stress‑responsive
	?	NC_000913	3583428 =	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

GTGCGAATGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGATTATTTCAGCTGTTATTTTCTGAAACTCTCAGAATAATTTCAAGATTATATATTAGCCATTTTGATGAGTAATTTAGATTATTGGTGAACAGAGCGGCGCTCTCTGCTCGCTAATTCCGCAAGCCTGACAAAATCAAAGTGAATAAAAA  >  NC_000913/2798458‑2798755                                                                                                                                                    |                                                                                                                                                       gTGCGAATGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggt                                                                                                                                                     >  1:37869‑M1/1‑148 (MQ=255)    cGAATGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgat                                                                                                                                                  >  1:775418‑M1/1‑145 (MQ=255)    cGAATGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgat                                                                                                                                                  <  1:928663‑M1/151‑7 (MQ=255)     gAATGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatg                                                                                                                                                 <  2:974099‑M1/151‑8 (MQ=255)     gAATGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatg                                                                                                                                                 <  1:783819‑M1/151‑8 (MQ=255)        tGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctg                                                                                                                                              >  2:1090215‑M1/1‑141 (MQ=255)           tATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgcc                                                                                                                                            <  1:609685‑M1/150‑13 (MQ=255)                 aaCTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttac                                                                                                                                     <  1:1128416‑M1/151‑20 (MQ=255)                  aCTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttact                                                                                                                                    <  1:406549‑M1/151‑21 (MQ=255)                   cTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttact                                                                                                                                    >  1:1158838‑M1/1‑130 (MQ=255)                     ttGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgat                                                                                                                                 >  2:737670‑M1/1‑128 (MQ=255)                     ttGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactg                                                                                                                                   <  1:815065‑M1/149‑22 (MQ=255)                      tGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatt                                                                                                                                >  2:294117‑M1/1‑127 (MQ=255)                         aaCATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttag                                                                                                                             <  2:830817‑M1/151‑28 (MQ=255)                         aaCATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgattta                                                                                                                              <  1:843131‑M1/150‑27 (MQ=255)                         aaCATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgattt                                                                                                                               >  1:1164564‑M1/1‑124 (MQ=255)                          aCATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagt                                                                                                                            >  2:265659‑M1/1‑123 (MQ=255)                          aCATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGGCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagt                                                                                                                            <  1:1120265‑M1/151‑29 (MQ=255)                               aCGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtat                                                                                                                        <  2:66767‑M1/150‑33 (MQ=255)                                       aataaAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgt                                                                                                                <  1:570830‑M1/150‑41 (MQ=255)                                        ataaAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgttt                                                                                                              <  2:121962‑M1/151‑43 (MQ=255)                                        ataaAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgttt                                                                                                              <  1:1039193‑M1/151‑43 (MQ=255)                                         taaAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttt                                                                                                             >  2:1063703‑M1/1‑108 (MQ=255)                                           aaGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                                                                                           <  1:986373‑M1/151‑46 (MQ=255)                                            aGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga                                                                                                          <  2:402531‑M1/151‑47 (MQ=255)                                            aGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                                                                                           >  1:93543‑M1/1‑105 (MQ=255)                                                aaCCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg                                                                                                      >  1:60028‑M1/1‑101 (MQ=255)                                                aaCCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg                                                                                                      >  1:591977‑M1/1‑101 (MQ=255)                                                aaCCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGATTATTTCAGCTGTTATTTTCTGAAACTCTCAGAATAATTTCAAGATtat                                                                                                      <  1:360223/151‑1 (MQ=255)                                                   cTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc                                                                                                   >  2:326734‑M1/1‑98 (MQ=255)                                                       tAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                                                                               >  1:598295‑M1/1‑94 (MQ=255)                                                         aCGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg                                                                                             <  2:343544‑M1/151‑60 (MQ=255)                                                         aCGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg                                                                                             >  2:684079‑M1/1‑92 (MQ=255)                                                             caaaacaaaaAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc                                                                                         >  2:1175404‑M1/1‑88 (MQ=255)                                                              aaaacaaaaTAAGTATTTCGGCGCGTAGTGTAAGCGATCACTTATTATATTTACACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggggctccagtggcttc                                                                                         >  2:729322‑M1/1‑87 (MQ=255)                                                               aaacaaaaAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg                                                                                       >  2:180141‑M1/1‑86 (MQ=255)                                                               aaacaaaaAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg                                                                                       <  2:428933‑M1/151‑66 (MQ=255)                                                                  caaaaAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggagtttttgaggtgctccagtggcttctgttt                                                                                    >  2:38089‑M1/1‑83 (MQ=255)                                                                   aaaaaaaGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc                                                                                   <  2:1053721‑M1/151‑70 (MQ=255)                                                                    aaaaaaGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct                                                                                  <  1:147200‑M1/151‑71 (MQ=255)                                                                     aaaaaGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct                                                                                  >  1:640992‑M1/1‑80 (MQ=255)                                                                      aaaaGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat                                                                                >  1:864487‑M1/1‑79 (MQ=255)                                                                        aaGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc                                                                               >  2:873725‑M1/1‑77 (MQ=255)                                                                            aTTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctg                                                                          >  1:167935‑M1/1‑73 (MQ=255)                                                                             tttCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt                                                                         >  2:737439‑M1/1‑72 (MQ=255)                                                                              ttCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc                                                                        >  2:501056‑M1/1‑71 (MQ=255)                                                                              ttCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt                                                                         <  2:910521‑M1/150‑80 (MQ=255)                                                                                cgtcgCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc                                                                      >  1:146488‑M1/1‑69 (MQ=255)                                                                                   cgcgTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc                                                                   >  1:36637‑M1/1‑66 (MQ=255)                                                                                   cgcgTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc                                                                   >  1:1177260‑M1/1‑66 (MQ=255)                                                                                   cgcgTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                                                                    <  1:1029759‑M1/150‑85 (MQ=255)                                                                                        aGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt                                                               >  2:799769‑M1/1‑61 (MQ=255)                                                                                        aGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt                                                               <  2:812062‑M1/150‑90 (MQ=255)                                                                                             aaGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta                                                         <  2:532247‑M1/151‑96 (MQ=255)                                                                                             aaGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta                                                         <  1:306329‑M1/151‑96 (MQ=255)                                                                                               gCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact                                                       >  2:892247‑M1/1‑54 (MQ=255)                                                                                                cGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                      >  2:36930‑M1/1‑53 (MQ=255)                                                                                                 gATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                      >  1:691629‑M1/1‑52 (MQ=255)                                                                                                    cACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacg                                                   >  1:364209‑M1/1‑49 (MQ=255)                                                                                                         attatATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtgg                                             <  1:720961‑M1/151‑108 (MQ=255)                                                                                                           tataTTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtg                                           >  2:880913‑M1/1‑42 (MQ=255)                                                                                                           tataTTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtg                                           >  2:764681‑M1/1‑42 (MQ=255)                                                                                                            atatTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc                                          >  2:490631‑M1/1‑41 (MQ=255)                                                                                                               tttCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgt                                        >  2:882303‑M1/1‑38 (MQ=255)                                                                                                                ttCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgta                                       >  2:181742‑M1/1‑37 (MQ=255)                                                                                                                    acaAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggc                                  >  1:620378‑M1/1‑33 (MQ=255)                                                                                                                     caAAATTTAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggc                                  >  1:887488‑M1/1‑32 (MQ=255)                                                                                                                           ttAATCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggggctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaag                             >  2:121791‑M1/1‑26 (MQ=255)                                                                                                                               tCTATTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgc                       >  2:626413‑M1/1‑22 (MQ=255)                                                                                                                                  aTTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgg                    <  1:999430‑M1/151‑133 (MQ=255)                                                                                                                                  aTTTACAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgg                    >  1:669608‑M1/1‑19 (MQ=255)                                                                                                                                      aCAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacat                <  1:1031391‑M1/151‑137 (MQ=255)                                                                                                                                       cAGTCCTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatc               >  2:232284‑M1/1‑14 (MQ=255)                                                                                                                                           ccTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc            >  2:772432‑M1/1‑10 (MQ=255)                                                                                                                                           ccTGCGCGAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc            <  1:904566‑M1/150‑141 (MQ=255)                                                                                                                                               cgcgAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctat       <  2:1099175‑M1/151‑146 (MQ=255)                                                                                                                                                  gAGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctc    <  1:731000‑M1/151‑149 (MQ=255)                                                                                                                                                    gggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctg  <  2:217093‑M1/151‑151 (MQ=255)                                                                                                                                                    |                                                                                                                                                       GTGCGAATGTTATTTAAACTTTGTAACATTACGGACATAATAAAGAAAACCTTTTAACGCCAAAACAAAAAAAGTATTTCGTCGCGTAGTGTAAGCGATCACTTATTATATTTCCACAAAATTTAATCTATTTACAGTCCTGCGCGAGATTATTTCAGCTGTTATTTTCTGAAACTCTCAGAATAATTTCAAGATTATATATTAGCCATTTTGATGAGTAATTTAGATTATTGGTGAACAGAGCGGCGCTCTCTGCTCGCTAATTCCGCAAGCCTGACAAAATCAAAGTGAATAAAAA  >  NC_000913/2798458‑2798755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.