Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,821,514 T→G I36L (ATT→CTT)  chbB ← N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,821,5140TG100.0% 241.8 / NA 58I36L (ATT→CTT) chbBN,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (36/22);  total (36/22)

CATAAAGCAGCGAGTCAATTACTTCAACCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAATAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTCAGCCA  >  NC_000913/1821367‑1821653
                                                                                                                                                   |                                                                                                                                           
cATAAAGCAGCGAGTCAATTACTTCAACCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCaagaat                                                                                                                                          <  2:566047/151‑1 (MQ=255)
               cAATTACTTCAACCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCata                                                                                                                           <  1:599386/151‑1 (MQ=255)
                aaTTACTTCAACCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCatat                                                                                                                          >  1:497692/1‑151 (MQ=255)
                   tACTTCAACCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATAtttt                                                                                                                       >  2:722066/1‑151 (MQ=255)
                       tCAACCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTc                                                                                                                     <  1:633919/149‑1 (MQ=255)
                          aCCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCt                                                                                                                >  2:763811/1‑151 (MQ=255)
                          aCCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCt                                                                                                                <  1:763836/151‑1 (MQ=255)
                           ccGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCtg                                                                                                               <  1:234109/151‑1 (MQ=255)
                           ccGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCtg                                                                                                               <  2:283642/151‑1 (MQ=255)
                                  gttgGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTgcgcgc                                                                                                        <  2:317502/151‑1 (MQ=255)
                                    tgGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCa                                                                                                       <  1:838067/150‑1 (MQ=255)
                                      ggTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCAttt                                                                                                    >  1:256425/1‑151 (MQ=255)
                                        tAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCAttttt                                                                                                  >  2:626269/1‑151 (MQ=255)
                                         aaCAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTg                                                                                                 >  2:330210/1‑151 (MQ=255)
                                           cAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGAt                                                                                               >  1:194261/1‑151 (MQ=255)
                                            aaaCGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGAt                                                                                               >  1:244156/1‑150 (MQ=255)
                                                gCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATAcc                                                                                            >  2:110970/1‑149 (MQ=255)
                                                  tGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGt                                                                                         >  2:70380/1‑150 (MQ=255)
                                                   ggATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGt                                                                                         <  1:811129/149‑1 (MQ=255)
                                                      tttCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTaa                                                                                       >  2:415634/1‑148 (MQ=255)
                                                          gggCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTa                                                                                <  1:867859/151‑1 (MQ=255)
                                                          gggCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTa                                                                                <  1:48979/151‑1 (MQ=255)
                                                             cAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGAc                                                                             >  2:795055/1‑151 (MQ=255)
                                                              aaCATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACa                                                                            <  1:540823/151‑1 (MQ=255)
                                                              aaCATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACa                                                                            <  2:418636/151‑1 (MQ=255)
                                                                cATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATg                                                                          >  1:214554/1‑151 (MQ=255)
                                                                   ataAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGccc                                                                       >  2:6266/1‑151 (MQ=255)
                                                                     aaGAAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGc                                                                     >  2:456897/1‑151 (MQ=255)
                                                                         aaTCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGcgg                                                                   <  2:1118125/149‑3 (MQ=255)
                                                                         aaTCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGa                                                                  >  1:746094/1‑150 (MQ=255)
                                                                                ggCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAAc                                                           >  1:635264/1‑150 (MQ=255)
                                                                                 gCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAAc                                                           >  1:226746/1‑149 (MQ=255)
                                                                                  cccTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGa                                                        <  1:839803/151‑1 (MQ=255)
                                                                                   ccTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGAt                                                       <  1:728503/151‑1 (MQ=255)
                                                                                       ataaCACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAAt                                                   >  2:259421/1‑151 (MQ=255)
                                                                                         aaCACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAAtgt                                                 <  2:1117032/151‑1 (MQ=255)
                                                                                               aCATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCt                                           >  1:560437/1‑151 (MQ=255)
                                                                                                cATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCtt                                          >  2:73118/1‑151 (MQ=255)
                                                                                                    ggCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTcc                                      >  2:321515/1‑151 (MQ=255)
                                                                                                    ggCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTcc                                      >  1:36130/1‑151 (MQ=255)
                                                                                                      cATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCAt                                    <  2:896809/151‑1 (MQ=255)
                                                                                                           tGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAAc                               >  1:1072463/1‑151 (MQ=255)
                                                                                                            gACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACt                              >  2:1053890/1‑151 (MQ=255)
                                                                                                            gACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACt                              >  1:925956/1‑151 (MQ=255)
                                                                                                            gACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACt                              <  1:455929/151‑1 (MQ=255)
                                                                                                                   ttCACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTc                        >  1:678532/1‑150 (MQ=255)
                                                                                                                     cACCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATc                     >  1:723538/1‑151 (MQ=255)
                                                                                                                      aCCAGCCAGTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATcg                    <  1:935850/151‑1 (MQ=255)
                                                                                                                        cagccagTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATcgac                  >  1:9725/1‑151 (MQ=255)
                                                                                                                        cagccagTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATcgac                  >  1:958609/1‑151 (MQ=255)
                                                                                                                        cagccagTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATcgac                  <  1:220739/151‑1 (MQ=255)
                                                                                                                         agccagTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATcgacg                 >  2:922663/1‑151 (MQ=255)
                                                                                                                             agTGTTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTAt            >  1:733844/1‑151 (MQ=255)
                                                                                                                              gtgtTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTAt            >  2:937295/1‑151 (MQ=255)
                                                                                                                              gtgtTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTAt            >  1:390485/1‑151 (MQ=255)
                                                                                                                               tgtTTCCGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATc           >  1:168531/1‑151 (MQ=255)
                                                                                                                                    ccGGAAATGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTc       <  1:103245/150‑1 (MQ=255)
                                                                                                                                        aaaTGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTCAGCCa  <  2:574540/151‑1 (MQ=255)
                                                                                                                                          aTGCTTCAAGAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTCAGcc   >  1:1044585/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                           
CATAAAGCAGCGAGTCAATTACTTCAACCGGTTTGTTGGGTAACAAACGCTGGATTTCGGGCAACATATAAGCAATCTGCGGCCCTAATAACACGACATCGGCATTCTGACCTTTTTCACCAGCCAGTGTTTCCGGAAATGCTTCAATAATGACCGGAACTTCATATTTTTCTGCCTGTGCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTCAGCCA  >  NC_000913/1821367‑1821653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: