| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618253 | 142 (0.970) | 4 (0.030) | 4/448 | 12.9 | 2.7% | coding (478/807 nt) | nikE | nickel ABC transporter ATPase |
| ? | NC_000913 | = 3618266 | 147 (1.040) | coding (491/807 nt) | nikE | nickel ABC transporter ATPase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
ACCGCTGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3617997‑3618253‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcgCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACCATCTGAATATCGCGGCGGAACGCTTTACGCTGGG < NC_000913/3618266‑3618020 ACCGCTGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCAACCGCAGTTAAGCGGCGGCCAGCCCC > 1:775658/1‑251ACCGCTGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCCACAAACGCCCACCCCAGTTAAGCTGCCGCCAGCCCC > 2:1437749/1‑251ACCGCTGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTAGCACTGAAAAAATCCGAACAACTGGCCCGCGCCAGCGAAATGCTGCAGGCGGTCGATCGCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCACC > 2:1347153/1‑251 CGCTGGCGCAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCAACCTGCTATCACTGAAAAAATCCGACCAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGCCAAACGCCCACCGCAGTTAAGCGGCTGCAAGCCCCcg > 2:383828/1‑249 GCTGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGAACTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGC > 1:872800/1‑251 TGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCCGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCAAGCGAAATGCTGCAGGCGGTAGATCTCGATGACACCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCcc > 1:578530/1‑249 TGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTCAGCGGCGGCACGCCCCAGgcg > 2:1313920/1‑248 TGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTACGCGGCGGCCAGCTCCAGCGC > 1:818906/1‑251 TGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGC > 1:287966/1‑251 TGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGC > 1:1163622/1‑251 TGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGC > 1:1079565/1‑251 ggctaacgcCAAGCGCGCCCAGCTTAAAGCGGTCGGCCGGTATATTCAGATGGTATTGCAGGACGCCATCAGCGCCGGGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGCG < 2:1197748/242‑1 CCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCG > 2:451133/1‑184 TCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATT < 1:551207/251‑1 TCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTCTGTCGAGAACGCGGTCATCGAGATCGACCGCCTTCAGGATTTCGCTGGCGTGCGGCAGGTCTGCGGATTTTTTCAGTGATAGGAGGTGGGCCACCGGTTCCCGCAGGAACGCGGTCAGGGTTTTGCGCGGGTTCcaggc > 2:551155/1‑246 CCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCCGCCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCCG‑ATGGGGTCCTGAAATACCATC > 1:623886/1‑251 atcagtagtttcggttcgaccgCCAGCGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGCTTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGCTCTCTCGCACGGTTTTGCGCGGAGTCTCGGTGCTGTCTGGTG‑CCTCACATACCACCTGAAT > 2:395961/23‑251 AGCGGCGGCCACCTCCGGCGCGCGAGCCAGGCAGACGCGCTGGGCCTGGCCTCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGGGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACCATCTGAATATCGCGGC < 2:623823/251‑1 CCAGCGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACCATCTGAATATCGCGGCGGAACGCTTTACGC > 1:188550/1‑251 CAGCGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACCATCTGAA > 1:785508/1‑227 AGCGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACCATCTGAATATCGCGGCGGAACGCTTTACGCTG < 1:378120/251‑1 CGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACCATCTGAATATCGCGGCGGACCGCTTTACGCTAGG > 2:1335337/1‑251 CGCGCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACAATCTGAATATCGCGGCGGAACGCTTTACGCTGGG > 1:680975/1‑251 ACCGCTGGCGAAACTCAATCGCGCCCAGCGTAAAGCGTTCCGCCGCGATATTCAGATGGTATTTCAGGACTCCATCAGCGCCGTGAATCCGCGCAAAACCGTGCGCGAGATCCTGCGTGAACCGATGCGCCACCTGCTATCACTGAAAAAATCCGAACAACTGGCGCGCGCCAGCGAAATGCTGAAGGCGGTCGATCTCGATGACAGCGTTCTCGACAAACGCCCACCGCAGTTAAGCGGCGGCCAGCTCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3617997‑3618253‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcgCGAGCCAGGCAGACGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCACGCAGGATCTCGCGCACGGTTTTGCGCGGATTCACGGCGCTG‑ATGGAGTCCTGAAATACCATCTGAATATCGCGGCGGAACGCTTTACGCTGGG < NC_000913/3618266‑3618020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |