mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 47 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,386,862 | 0 | G | A | 63.6% | ‑3.0 / 15.3 | 22 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 354,288 | 0 | T | G | 61.9% | 6.0 / 14.9 | 21 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 1,982,523 | 0 | A | G | 60.0% | 9.8 / 21.0 | 20 | intergenic (‑136/+31) | otsB/araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| * | NC_000913 | 300,711 | 0 | G | C | 58.3% | 5.1 / 27.9 | 24 | P75R (CCG→CGG) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 987,494 | 0 | T | G | 58.3% | 4.1 / 12.2 | 12 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 4,331,794 | 0 | T | G | 58.3% | 4.5 / 11.6 | 12 | G431G (GGT→GGG) | proP | proline/glycine betaine transporter |
| * | NC_000913 | 2,337,723 | 0 | A | C | 57.1% | 17.5 / 32.8 | 29 | G566G (GGT→GGG) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 2,578,143 | 0 | A | C | 57.1% | 4.6 / 12.3 | 14 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 366,526 | 0 | T | G | 56.5% | 14.3 / 24.0 | 23 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 4,279,471 | 0 | T | G | 54.5% | 31.2 / 36.1 | 22 | G331G (GGT→GGG) | ghxP | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter |
| * | NC_000913 | 987,524 | 0 | G | A | 53.8% | 4.5 / 15.9 | 13 | intergenic (‑542/+61) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 354,282 | 0 | T | G | 52.4% | 13.9 / 22.3 | 21 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 1,982,529 | 0 | C | A | 52.4% | 19.9 / 36.0 | 21 | intergenic (‑142/+25) | otsB/araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| * | NC_000913 | 357,880 | 0 | T | C | 52.2% | 8.6 / 23.4 | 23 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,492,028 | 0 | C | T | 51.6% | 23.9 / 44.0 | 32 | Q90Q (CAG→CAA) | ppiA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A) |
| * | NC_000913 | 659,942 | 0 | G | A | 51.3% | 16.8 / 45.6 | 39 | A92V (GCT→GTT) | lipA | lipoate synthase |
| * | NC_000913 | 3,578,287 | 0 | T | C | 50.0% | 25.8 / 12.7 | 38 | E147G (GAA→GGA) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| * | NC_000913 | 2,958,771 | 0 | A | T | 48.6% | 41.3 / 15.8 | 35 | D38E (GAT→GAA) | ptrA | protease III |
| * | NC_000913 | 2,386,883 | 0 | C | T | 48.4% | 17.5 / 23.4 | 31 | intergenic (+52/‑51) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 659,940 | 0 | T | A | 47.5% | 45.1 / 16.5 | 40 | I93F (ATT→TTT) | lipA | lipoate synthase |
| Marginal new junction evidence (lowest skew 10 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1616896 = | 979 (28.190) | 15 (0.460) | 11/276 | 1.2 | 1.6% | intergenic (+18/‑132) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible |
| ? | NC_000913 | 1616928 = | 984 (30.390) | intergenic (+50/‑100) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible | |||||
| * | ? | NC_000913 | = 1616905 | 979 (28.190) | 12 (0.370) | 10/276 | 1.3 | 1.2% | intergenic (+27/‑123) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible |
| ? | NC_000913 | = 1616917 | 984 (30.390) | intergenic (+39/‑111) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible | |||||
| * | ? | NC_000913 | 3927418 = | 55 (1.580) | 7 (0.220) | 7/272 | 1.9 | 13.7% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3927457 = | 38 (1.190) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | 326549 = | 35 (1.010) | 7 (0.220) | 7/276 | 1.9 | 15.8% | coding (699/1671 nt) | betA | choline dehydrogenase, a flavoprotein |
| ? | NC_000913 | 326652 = | 42 (1.300) | coding (596/1671 nt) | betA | choline dehydrogenase, a flavoprotein | |||||
| * | ? | NC_000913 | 1207790 = | 31 (0.890) | 6 (0.190) | 6/264 | 2.0 | 17.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 31 (1.000) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 31 (0.890) | 6 (0.190) | 5/264 | 2.3 | 17.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 31 (1.000) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4633457 = | 32 (0.920) | 6 (0.180) | 5/278 | 2.4 | 20.0% | coding (289/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| ? | NC_000913 | 4633593 = | 18 (0.550) | coding (153/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase | |||||
| * | ? | NC_000913 | 3621014 = | 25 (0.720) | 8 (0.240) | 5/280 | 2.4 | 19.4% | coding (1823/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3621066 = | 43 (1.310) | coding (1875/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3381839 = | 28 (0.810) | 5 (0.150) | 5/278 | 2.4 | 16.1% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | NC_000913 | 3381869 = | 26 (0.800) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | NC_000913 | = 3355606 | 36 (1.040) | 5 (0.150) | 5/280 | 2.4 | 12.5% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | = 3355642 | 36 (1.100) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||