| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | = 2470479 | 148 (1.470) | 12 (0.130) | 9/278 | 9.1 | 8.1% | intergenic (+17/‑336) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| ? | NC_000913_3_hsa_pgi | = 2470483 | 135 (1.430) | intergenic (+21/‑332) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_pgi/2470323‑2470479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgccaTGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCTCTA < NC_000913_3_hsa_pgi/2470483‑2470336 tctggtAAGTATAAAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTAAACATAACAGTCGTTTGTTTAATTTATAAAATAATTCACAGAAATCAAGACAATAGCGATGTAAAGCACTAAGGTTAAATT < 2:1274441/143‑1TCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATT < 2:429681/149‑1 GGGGAAGGATTTAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGC < 2:1520781/149‑1 GGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGC < 1:718416/149‑1 AAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAA < 2:760366/149‑1 AAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAA < 2:625164/149‑1 AAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTATTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAA < 2:710839/149‑1 AGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAAT < 2:137889/149‑1 AGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAAT < 1:805596/149‑1 GCAATCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACCGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAATT < 1:1301288/149‑1 CATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAGTGCGCGCCATGATTGGCGCGCAATTTAAAC < 2:1033836/149‑1 TCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAGTGCGCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATT < 1:1028198/149‑1 CGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTT < 2:1025992/149‑1 taATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTG < 1:319350/147‑1 TATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGA < 2:840315/149‑1 tgTTGCGCGCCATGATTGGAGCGCAATTTAAACTTAGTCCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTAAAAATAAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGC < 2:1493982/147‑1 TGCGCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTA > 2:207662/1‑149 TGCGCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTA > 2:52605/1‑149 GCGCGCCATTATTGGCGCGAAATTTAAACTTATTGCTTTACATCGCTATTTTTTTGATTTATTTGAATTTTTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAA < 1:823229/149‑1 CGCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAA > 1:1644045/1‑149 GCGCCATGATTTGCGCGCAATTTAACCTTTGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAATAACACGACTGTTATGTATCAGCAAACGGCGAACGAATAATACATTCCAAATAAATGCTTGCTTAAAT < 2:1497929/149‑1 GCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAACCGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAAT > 1:350688/1‑149 GCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAAT < 2:1597321/149‑1 GCGCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCAAAATAAATGCTTGCTTAAAT > 1:433870/1‑149 GCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCT > 2:1530398/1‑149 GCCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCT > 1:15688/1‑149 aCATGATTGTCGAGAAATTTAAACTAAGTTCTTTACATCTCTATTGTCTTGATTTATTTGAATTATTTTATAAATAAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCTC < 1:1201248/148‑1 CCATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTATATCTC > 1:727577/1‑149 CATGTTTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGTATTATTTTTTAAATTAAAAAAACGACTGTTATGTATAAGCTAATGTCGAACGAAAAATACATTCCAAATATATGCTTGCTTAAATCTCT < 2:126877/149‑1 CATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCTCT < 2:1030525/149‑1 CATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGATTAAATCTCT > 1:1014199/1‑149 ATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCTCTA > 2:380257/1‑149 ATGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCTCTA > 2:116800/1‑149 TCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_hsa_pgi/2470323‑2470479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgccaTGATTGGCGCGCAATTTAAACTTAGTGCTTTACATCGCTATTGTCTTGATTTCTTTGAATTATTTTATAAATTAAAAAAACGACTGTTATGTATAAGCAAAGGTCGAACGAAAAATACATTCCAAATAAATGCTTGCTTAAATCTCTA < NC_000913_3_hsa_pgi/2470483‑2470336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |