New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 2362102 =32 (0.910)3 (0.090) 3/266 NT 7.7% coding (110/783 nt) rhmR putative DNA‑binding transcriptional regulator for the rhm operon
?NC_000913_3_hsa_pgi 2362167 = 41 (1.200)coding (45/783 nt) rhmR putative DNA‑binding transcriptional regulator for the rhm operon

AGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTT  >  NC_000913_3_hsa_pgi/2361954‑2362249
                                                                                                                                                    |                                                                                                                                                   
atttctccagtctgctggacgaggagcgggatttgatgcgcttcacaattttactccccctgagcaacgagactgattccagtatctaagactggaatccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgata                                                                                                                                                     <  1:624297‑M1/1‑1 (MQ=255)
        cccGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                                                                                                             <  1:60514/149‑1 (MQ=255)
        cccGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                                                                                                             <  1:495207/149‑1 (MQ=255)
                        gCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTCTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcgtcg                                                                                                                             <  1:330423/149‑1 (MQ=255)
                                 aTGACCGGAAAGCTGCAACAGCCTGGTGCACAAACAAAAATGTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCATCACTAc                                                                                                                    <  2:247207/149‑1 (MQ=255)
                                     ccGGAACGCTTCGTCAGCCTGGTCAACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGCGTTCACTAAGCAGAACATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  2:307660/149‑1 (MQ=255)
                                     ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCGTATATGCCTTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  2:408560/149‑1 (MQ=255)
                                     ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  1:636434/149‑1 (MQ=255)
                                     ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  2:530065/149‑1 (MQ=255)
                                      cGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAgggg                                                                                                               >  1:457543/1‑149 (MQ=255)
                                               ccaccaGCCTGGGCCACAAACAAAAATTTTTCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCgg                                                                                                      <  2:19204/149‑1 (MQ=255)
                                                caccaGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGCGCCAATGCggg                                                                                                     >  1:141095/1‑149 (MQ=255)
                                                 accaGCCTGGTCCACAACCAAAATTTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGc                                                                                                    <  1:401514/149‑1 (MQ=255)
                                                   caGGCTGGTACACAAACAACAACTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCaa                                                                                                  <  1:73916/149‑1 (MQ=255)
                                                           tCCACAAACAAAAATTTTCCTGGTGGTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAGTAGGCCGTGCTTTTAGGGCTTCCCAATGTGTCAATGATCGTCGCAGGACTACAGGCGCCCCGGCGGACAATCAAAtta                                                                                          >  1:111982/1‑148 (MQ=255)
                                                             cacaAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAACAAATAGGCCGTGCTTTTAGGGATTCCGAATGTGTCAAGGATCGTCGCAGAATTACAGGGGCCAATGCGGGCAATCAAATTgag                                                                                        >  2:361172/1‑149 (MQ=255)
                                                                  acaaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGCatat                                                                                   >  1:209042/1‑149 (MQ=255)
                                                                   caaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATc                                                                                  <  1:205966/149‑1 (MQ=255)
                                                                         ttttCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc                                                                            <  2:485707/149‑1 (MQ=255)
                                                                         ttttCCTGGTGACCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc                                                                            <  1:127914/149‑1 (MQ=255)
                                                                              cTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAAGAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGAACTACAGGGGCCAATGAGGGCAATCAAATTGAGAATATCAATAGCCCgga                                                                       >  2:444798/1‑147 (MQ=255)
                                                                               tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCgtgt                                                                      >  1:476067/1‑149 (MQ=255)
                                                                               tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCGCTTAGGAATTCCCAATGTGTCAATGATCGTCGCAGCACTCCAGGGGCCAATGCGGGCAATCAAATTGACAACCTCAATACCCCgtat                                                                      >  2:108400/1‑147 (MQ=255)
                                                                                    tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat                                                                                   <  2:171546‑M1/67‑1 (MQ=255)
                                                                                    tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat                                                                                   >  1:171546‑M1/65‑131 (MQ=255)
                                                                                    aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg                                                                 >  2:621323/1‑149 (MQ=255)
                                                                                    aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg                                                                 >  2:195953/1‑149 (MQ=255)
                                                                                     tCAAGGCTAAGAAAGCGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGGGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGc                                                                <  1:114707/149‑1 (MQ=255)
                                                                                                  aaCGCTTACGGCTGAGGTCATTAAACATCAATTAGGCCGTGATTTTAGGGATTCCAAATGTGTCAATAATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCtt                                                   <  2:305599/149‑1 (MQ=255)
                                                                                                       tGACGGCTGGCTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCCCTACAGGGGCCAATGCGGGCACTCAAATTGAGAATATCAATAGCCCGGGTCAGGGCGGGAACTTTGCTTGATTc                                              <  2:226983/149‑1 (MQ=255)
                                                                                                           gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc                                          >  1:362885/1‑149 (MQ=255)
                                                                                                           gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc                                          >  1:31209/1‑149 (MQ=255)
                                                                                                              tGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATa                                       <  2:650587/149‑1 (MQ=255)
                                                                                                                 gTTCATGAAGCGGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTg                                    <  2:521203/149‑1 (MQ=255)
                                                                                                                   tcatcaAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGa                                  <  1:175808/149‑1 (MQ=255)
                                                                                                                       aagttcccgccctgacacgggctcttgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAGTTGCGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGCCTcc                              <  2:615057‑M1/120‑1 (MQ=255)
                                                                                                                                                  ggATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTATTAGCTACTGGAATCAGTCTCGt   >  2:518915/1‑149 (MQ=255)
                                                                                                                                                   gATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAAGAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTTTCGtt  >  1:285397/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
AGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTT  >  NC_000913_3_hsa_pgi/2361954‑2362249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.