New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_hsa_pgi | 2362102 = | 32 (0.910) | 3 (0.090) | 3/266 | NT | 7.7% | coding (110/783 nt) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
? | NC_000913_3_hsa_pgi | 2362167 = | 41 (1.200) | coding (45/783 nt) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
AGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTT > NC_000913_3_hsa_pgi/2361954‑2362249 | atttctccagtctgctggacgaggagcgggatttgatgcgcttcacaattttactccccctgagcaacgagactgattccagtatctaagactggaatccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgata < 1:624297‑M1/1‑1 (MQ=255) cccGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt < 1:60514/149‑1 (MQ=255) cccGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt < 1:495207/149‑1 (MQ=255) gCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTCTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcgtcg < 1:330423/149‑1 (MQ=255) aTGACCGGAAAGCTGCAACAGCCTGGTGCACAAACAAAAATGTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCATCACTAc < 2:247207/149‑1 (MQ=255) ccGGAACGCTTCGTCAGCCTGGTCAACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGCGTTCACTAAGCAGAACATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg < 2:307660/149‑1 (MQ=255) ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCGTATATGCCTTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg < 2:408560/149‑1 (MQ=255) ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg < 1:636434/149‑1 (MQ=255) ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg < 2:530065/149‑1 (MQ=255) cGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAgggg > 1:457543/1‑149 (MQ=255) ccaccaGCCTGGGCCACAAACAAAAATTTTTCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCgg < 2:19204/149‑1 (MQ=255) caccaGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGCGCCAATGCggg > 1:141095/1‑149 (MQ=255) accaGCCTGGTCCACAACCAAAATTTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGc < 1:401514/149‑1 (MQ=255) caGGCTGGTACACAAACAACAACTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCaa < 1:73916/149‑1 (MQ=255) tCCACAAACAAAAATTTTCCTGGTGGTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAGTAGGCCGTGCTTTTAGGGCTTCCCAATGTGTCAATGATCGTCGCAGGACTACAGGCGCCCCGGCGGACAATCAAAtta > 1:111982/1‑148 (MQ=255) cacaAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAACAAATAGGCCGTGCTTTTAGGGATTCCGAATGTGTCAAGGATCGTCGCAGAATTACAGGGGCCAATGCGGGCAATCAAATTgag > 2:361172/1‑149 (MQ=255) acaaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGCatat > 1:209042/1‑149 (MQ=255) caaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATc < 1:205966/149‑1 (MQ=255) ttttCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc < 2:485707/149‑1 (MQ=255) ttttCCTGGTGACCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc < 1:127914/149‑1 (MQ=255) cTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAAGAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGAACTACAGGGGCCAATGAGGGCAATCAAATTGAGAATATCAATAGCCCgga > 2:444798/1‑147 (MQ=255) tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCgtgt > 1:476067/1‑149 (MQ=255) tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCGCTTAGGAATTCCCAATGTGTCAATGATCGTCGCAGCACTCCAGGGGCCAATGCGGGCAATCAAATTGACAACCTCAATACCCCgtat > 2:108400/1‑147 (MQ=255) tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat < 2:171546‑M1/67‑1 (MQ=255) tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat > 1:171546‑M1/65‑131 (MQ=255) aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg > 2:621323/1‑149 (MQ=255) aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg > 2:195953/1‑149 (MQ=255) tCAAGGCTAAGAAAGCGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGGGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGc < 1:114707/149‑1 (MQ=255) aaCGCTTACGGCTGAGGTCATTAAACATCAATTAGGCCGTGATTTTAGGGATTCCAAATGTGTCAATAATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCtt < 2:305599/149‑1 (MQ=255) tGACGGCTGGCTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCCCTACAGGGGCCAATGCGGGCACTCAAATTGAGAATATCAATAGCCCGGGTCAGGGCGGGAACTTTGCTTGATTc < 2:226983/149‑1 (MQ=255) gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc > 1:362885/1‑149 (MQ=255) gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc > 1:31209/1‑149 (MQ=255) tGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATa < 2:650587/149‑1 (MQ=255) gTTCATGAAGCGGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTg < 2:521203/149‑1 (MQ=255) tcatcaAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGa < 1:175808/149‑1 (MQ=255) aagttcccgccctgacacgggctcttgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAGTTGCGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGCCTcc < 2:615057‑M1/120‑1 (MQ=255) ggATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTATTAGCTACTGGAATCAGTCTCGt > 2:518915/1‑149 (MQ=255) gATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAAGAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTTTCGtt > 1:285397/1‑149 (MQ=255) | AGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTT > NC_000913_3_hsa_pgi/2361954‑2362249 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |