BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	4218566 =	70 (1.310)	9 (0.170) +T	9/268	NT	11.5%	noncoding (131/132 nt)	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences
*	?	NC_000913_3_hsa_pgi	= 4254055	NA (NA)	9 (0.170) +T	9/268	NT	11.5%	noncoding (127/130 nt)	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 114 total aligned reads displayed.

AACAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAACAGGCCGACTG  >  NC_000913_3_hsa_pgi/4218419‑4218714

tttctgatgatgtaaaaaagccggatgatcatccggctttcttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaattcattgaattagcagattaaggaaagccgaaaaaagcgttttcgccgcatccaGc                                                                                                                                                      <  1:36628‑M1/2‑1 (MQ=255)

 ttctgatgatgtaaaaaagccggatgatcatccggctttcttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccgcatcaggcgttttcgccgcatccaGCa                                                                                                                                                     <  1:953204‑M1/3‑1 (MQ=255)

  caacCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGATGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                                                                                                    <  2:345344/149‑1 (MQ=255)

    tgatgatgtaaaaaagccggatgatcatccggctttcttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaattgattgaatttgcagattatggaaggccggataaggcgttctcaccgcatccaGCAAtt                                                                                                                                                  <  2:320592‑M1/6‑1 (MQ=255)

    acCGTTGCTGACTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAAtt                                                                                                                                                  <  1:61342/149‑1 (MQ=255)

      cGTTGCTGACTGTAGGCCGGATAATGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                                <  1:268965/149‑1 (MQ=255)

      cGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCTATCAGAGCAGGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                                <  1:29033/149‑1 (MQ=255)

      cGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                                <  1:559605/149‑1 (MQ=255)

      atgatgtaaaaaagccggatgatcatccggctttcttctgggtggcctgatgcgcggcgcttcccaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttcgccgcatccaGCAAttcc                                                                                                                                                <  2:283137‑M1/8‑2 (MQ=255)

       cttttgtaCTATAGGCCGCATAAGTCTTTCACGCAGCATCCGGCAATCGGTGCACGATGGCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtctc                                                                                                                                               <  2:397540/142‑1 (MQ=21)

         atgtaaaaaagccggatgatcatccggctttcttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccgaataaggcgttttcgccgcatgcagcaattttatg                                                                                                                                             <  1:130721‑M1/11‑6 (MQ=255)

             gACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCAGCATCCGGCAATTCTCTGCTcc                                                                                                                                         >  1:959777/1‑149 (MQ=255)

                tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACGGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtga                                                                                                                                      >  1:893977/1‑149 (MQ=255)

                tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGCTAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtga                                                                                                                                      >  1:4769/1‑149 (MQ=255)

                aaagccggatgatcatccggctttcttctgggttgcctgatgcgcggcgcttctcaggcctacacaccacatcgcaatttattgaatttgcagattatggaaggccggataagtcgttttcgccgcatccaGCAATTCTCTGCTcctca                                                                                                                                      <  1:853638‑M1/18‑3 (MQ=255)

                 aagccggatgatcatccggctttcttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttatcgaatttgcagattatggaaggccggataaggcgttttcgtCGCATCCGGCAATTCTCTGCCcctgct                                                                                                                                     <  2:24847‑M1/27‑3 (MQ=255)

                     gCCGTATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGACTGATGCGACGCTTGCTCGTCTTATCATGCCTACAGCCGTTGCCGCACGTAGACTGGATAAGGCTTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAgg                                                                                                                                 <  1:849874/149‑1 (MQ=25)

                     gCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtgatgacg                                                                                                                                 >  1:665996/1‑147 (MQ=255)

                       tggATAAGGCGTTCACGCTGCCTCCGGCAATCGGTACACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgc                                                                                                                               <  1:5000/148‑1 (MQ=255)

                       cGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgc                                                                                                                               >  1:823861/1‑149 (MQ=255)

                         gATAAGGCGGTCACGCCGCATCCGGCAATCGGTGCACGATGCTTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgcgc                                                                                                                             <  2:615727/149‑1 (MQ=255)

                            tcatccggctttcttctggattgcctgatgcgcggcgcttctcaggcctacacaacacatggcaatttattgaatttgcagattatgaaatgccgtataaggcgttttaGCCGCATCCGCCAATTCTCTGTTCATGATGAGGGCGCtat                                                                                                                          <  2:501187‑M1/40‑2 (MQ=255)

                            aaGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTaa                                                                                                                          >  2:80957/1‑149 (MQ=255)

                              ggCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTAATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTGAAt                                                                                                                        >  2:261599/1‑149 (MQ=255)

                                     aCGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATACGGCAATTCTCTGCTCCTGTTGAGGGCGCTCAATGCCGCGt                                                                                                                 >  2:680356/1‑149 (MQ=255)

                                         ttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttaGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGcc                                                                                                             <  1:90538‑M1/53‑1 (MQ=255)

                                         cgcATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGcc                                                                                                             <  1:397805/149‑1 (MQ=255)

                                            aTCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCAGATGAGGGCGCTAAATGCCGCGTGGCCTgg                                                                                                          >  1:255401/1‑149 (MQ=255)

                                              ggttgcctgatgcgcggcgctcctcaggcctacacaacacatcgcaatttattgaatttgcagtttatggaaggtcggataaggcgttttcgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGaa                                                                                                        >  1:252161‑M1/94‑149 (MQ=255)

                                                ggCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACGGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAAATCTCTGCTCCTGACGAGGGCGCTAAATACCGCGTGGCATAGAatc                                                                                                      >  2:192416/1‑148 (MQ=37)

                                                ggCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCTGCGTGGCCTGGAatt                                                                                                      >  1:712549/1‑149 (MQ=255)

                                                   cctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatgtaaggccggataaggcgttttaGCCGCATCCGGCGATTCTATGATCCTGATGAGGTCGCTACATGCCGAGTGGCATGGAattatt                                                                                                   <  2:628599‑M1/63‑1 (MQ=255)

                                                     tCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattga                                                                                                 <  2:305868/149‑1 (MQ=255)

                                                     tCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattga                                                                                                 <  1:817879/149‑1 (MQ=255)

                                                        tgcgcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttcgccgcatccaGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattgattg                                                                                              >  1:829268‑M1/92‑149 (MQ=255)

                                                           gcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgtttttttTTTTTTTTGCAATTCTCTGCTCCTGATGAGGGCGCTCAATGCCGCGTGGCCTGGAATTCTTGATTGCTc                                                                                           <  2:236251‑M1/69‑1 (MQ=255)

                                                            cggcgctttttaggcctacacaacacatcgcaatgtattgaatttgcagattatggaaggctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCa                                                                                          >  2:763349‑M1/77‑149 (MQ=255)

                                                            aCGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCa                                                                                          <  1:80957/149‑1 (MQ=255)

                                                             ggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttcgccgcatccaGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCaa                                                                                         <  1:892285‑M1/63‑1 (MQ=255)

                                                              gcgcttctcaggcctacacaacacatcgtaatttattgaattttcatattatggaaggccggataaggcgttttcgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCaaa                                                                                        >  1:601458‑M1/78‑149 (MQ=255)

                                                              gcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggagaaggcgttttaGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCaaa                                                                                        >  1:893546‑M1/76‑149 (MQ=255)

                                                                tGCCTGATGCGGCGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGGTAAGGCGGTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAcc                                                                                      >  2:541848/1‑149 (MQ=255)

                                                                  ccTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCCTGGCCTGGAATTATTGATTGCTCAAACCAt                                                                                    >  2:787399/1‑149 (MQ=255)

                                                                   cTGATGCTACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCAtt                                                                                   <  1:527522/149‑1 (MQ=255)

                                                                    ctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttaGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGGTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAACACAttt                                                                                  <  2:47210‑M1/80‑1 (MQ=255)

                                                                     tcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttaGCCGCATCCGGCAATTCTCTCCTCCTGATGACGGCACTACATGCCGCCTGGCCTGGAATAATTACTTGCTAGAACCAtttt                                                                                 <  2:731821‑M1/81‑1 (MQ=255)

                                                                        gCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTgg                                                                                                               >  2:486730/1‑116 (MQ=255)

                                                                          gACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAg                                                                            >  1:595462/1‑149 (MQ=255)

                                                                           aCGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCACGTCGCCTGGAATCATTGATTGCTCAAACCATTTTGCAAga                                                                           >  1:377458/1‑148 (MQ=255)

                                                                            tacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttcgccgcatccaGCAATTCTCTGCTCCTGAAAAGGACGCTAAATGCCGCGTGGCCTGGAATTATTGATGTGTCAAACCATTTTGCAAGGc                                                                          <  1:379235‑M1/78‑1 (MQ=255)

                                                                                 aacacatggcaatttattgaattttcagattatggaaggccggataaggttttttcgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGa                                                                     >  1:126763‑M1/59‑149 (MQ=255)

                                                                                  cgcgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCACGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGag                                                                    >  1:323228/1‑148 (MQ=255)

                                                                                   gcgTCTTATCATGCCTACAGGCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCCGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATg                                                                   <  2:354647/149‑1 (MQ=255)

                                                                                    cgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGACAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTg                                                                                                           >  2:940867/1‑108 (MQ=255)

                                                                                    cgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGACAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTg                                                                                                           <  1:940867/108‑1 (MQ=255)

                                                                                      tCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAatt                                                                                                      >  2:544201/1‑111 (MQ=255)

                                                                                      tCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAatt                                                                                                      <  1:544201/111‑1 (MQ=255)

                                                                                         tATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattgat                                                                                                <  2:806181/114‑1 (MQ=255)

                                                                                          caatttattgtatttgcagattatggaaggctggttaaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTa                                                           >  1:362620‑M1/47‑149 (MQ=255)

                                                                                          aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCt                                                                                            <  2:979501/117‑1 (MQ=255)

                                                                                          aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAc                                                                                       <  2:624030/122‑1 (MQ=255)

                                                                                          aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAc                                                                                       >  1:624030/1‑122 (MQ=255)

                                                                                          aTCATGCCTAAAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCt                                                                                            >  1:979501/1‑117 (MQ=255)

                                                                                             aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATgg                                                        >  1:772000/1‑149 (MQ=255)

                                                                                             aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATgg                                                        >  1:463536/1‑149 (MQ=255)

                                                                                             aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGCCTTCGATGCT‑CAGTATgg                                                        >  1:308197/1‑149 (MQ=255)

                                                                                              tGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTTGCCTGGAATTATTGATTGCTAAAACCATTTTGGAGGGCTTCGAGGAT‑CAGTATGGt                                                       >  1:477341/1‑149 (MQ=39)

                                                                                               gCCTACAGCCGTTGTCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTc                                                      <  2:98179/149‑1 (MQ=255)

                                                                                                 gtgaatttggagattattgaaggccggataaggcggtttcgtCGCATCCGGCTATTCTCTGCTCCTGATGAGGGAGCTAAATGTCGCGTGGCCTGGAATTATTGCTTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGa                                                    >  2:308067‑M1/43‑149 (MQ=255)

                                                                                                 gtgaatttggagattatggaaggccggataaggcgttttggtCGCATCCGGGAATTCTCTGCTCCTGATGAGGGCGCTACATGCCGGGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGa                                                    >  2:445670‑M1/43‑149 (MQ=255)

                                                                                                    aatttgcagagtatggaaggccggataaggaattttcgccgcatccaGCACTTCACTGCTCCTGATAAGGGCGCTAAATACCGCGTCGACTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTACATGCT‑AAGTatggtcagtag                                                 <  2:187220‑M1/102‑6 (MQ=255)

                                                                                                      tttgcagattatgaaaggcttgataaggcgatttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCt                                               >  1:153076‑M1/35‑149 (MQ=255)

                                                                                                       ttgcagattatggaaggctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTc                                              >  1:346582‑M1/34‑149 (MQ=255)

                                                                                                          ttGCCGAACGTAGGCTGCATAAGGTGGTTACGCCGCAGCCGGCAATTCTCTGCTCCTGATGAGGGCGCTATATGCCGCGTGGCCTGGAATTATCGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CATTATGGTCGATGCCTCGaa                                           <  1:928242/149‑1 (MQ=255)

                                                                                                              cGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTAAGGTCGATTCCTCGAAGTGa                                       >  1:12241/1‑149 (MQ=255)

                                                                                                              cGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTATCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGCAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGtac                                       >  2:519985/1‑147 (MQ=255)

                                                                                                              cGAACGTAGGCTGGATAAGGCGTTGACGCCGCATGCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAGGGCTTCGAGGCT‑CAGTATGGTCGATTCCTCGAAGTGa                                       <  2:701969/149‑1 (MQ=255)

                                                                                                                   gTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGCTAAGCGCGCTAAATGCCGCGTAGCCTAGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCTATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTcc                                  >  1:141648/1‑149 (MQ=39)

                                                                                                                    aatgccggATAAGGCGTTTTCGCCGCATTCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCg                                 <  1:549633/143‑1 (MQ=255)

                                                                                                                      ggacggataatgcgttttcgccgcatccaACCCCTCGCAGCTTTTTATGAGGGCGCTAAATGCCGCGTGGCCTGGCATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGt                               >  1:939064‑M1/30‑149 (MQ=255)

                                                                                                                      ggCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGt                               >  1:837335/1‑149 (MQ=255)

                                                                                                                        cTGGATAAGGCGTTTACGCCACCACCTTCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTgc                             <  2:959777/149‑1 (MQ=255)

                                                                                                                         tGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAg                                                             <  2:263559/116‑1 (MQ=255)

                                                                                                                              aaGGCGTGTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCgcagca                       <  1:681897/149‑1 (MQ=255)

                                                                                                                                 gCGTTTACGCCGCCTCCAGCAAGTTTCTGCTCCTGATGCGGGGACGAAATCCCGAGTGGGATGTACTGCTGGAATACACAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCATCGAAGTGACCGCCGGTGCGCAGCACCg                    >  2:966103/1‑149 (MQ=255)

                                                                                                                                   gcttACGCCTCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTACATGCCGCGTGGCCTGGAATTATTTATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGtt                  <  2:549093/147‑1 (MQ=255)

                                                                                                                                   gTTTGCGGCGAACCCGGCAATGCTCTGCTGCTGATGAGGTCGCCAAAGGCGTGGTTGCCTGGTATTTTTGATTGCTCAAACCATTTTGCAAGTCTTCGGTGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGtt                  <  2:193660/149‑1 (MQ=255)

                                                                                                                                    ttgtcgccgtAGCCGGCAATTCTCGGCTCCTGATGAGGGCGCTAAATGCCGCGGGGCCTGGAATGATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGGT‑CAGAGTGGGCGATTCCTCGAAGTGAGCGCCGGTGCGCAGCAGCGtgt                 <  2:170765/145‑3 (MQ=255)

                                                                                                                                    gtttcgacgcAGCCGGCTATTCTTTGCTCCTGGTGATGGCGATAAATGCAGCGTGGCCGTGAATTATTGATTGCTTAAATCTTTTTGCAAGGCTTAGATGCT‑CAGTATGGTCGATTCCTCGTGGTGTCCTCCGGTGCGCAGCAGCGttt                 <  2:286252/142‑1 (MQ=255)

                                                                                                                                     ttccgccgcATCCGGCTATTCTTTCCTCCTGATGAGGGCGCTAAATGCCGCGTGGCATGGAGCTATTGACTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTc                <  1:233535/146‑1 (MQ=255)

                                                                                                                                       gcggcgcATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCGGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGa              <  2:248708/145‑1 (MQ=255)

                                                                                                                                        cgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGaa             >  1:596761‑M1/4‑149 (MQ=255)

                                                                                                                                        cggcgcATCTGGCAATTCCCTGCTCCTGAGGAGGGCGGTAAATGCCGCGTGGCCCGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACTTCCGGTGCGTAACAGCGTTTCGaa             <  2:371014/146‑1 (MQ=255)

                                                                                                                                         gtCGTATCCTGCAATTCTCTGCTCCTGATGAGGGCGCTTAATGCCGCGTGGCCTGGAATTATTTATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAAc            >  2:351746‑M1/3‑149 (MQ=255)

                                                                                                                                         gtCGCATTCGGCAATTCTCTTCTCCTGATGAGGGCGCGAAATGCCGCGTGGCCTGGAATTATTGATTGCTTAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAAc            >  1:464522‑M1/3‑149 (MQ=255)

                                                                                                                                          ccgcATCCGGCACTTCTCTGCTCCTGATGAGGGCCCTCAATGCCGCGTGGCCTGCAATTATTGATTGCTCAAACAATTTTGCAAGGCTTCGATGCT‑CAGTATGGACGCTTCCTCGACCTGACATACCAACCGCAGCCGCGTTTCTAACa           >  2:959714/1‑149 (MQ=255)

                                                                                                                                             tattcGGCAATTCTCTGCTCCTGATGAGGGTGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAACAGGc        <  2:170219/145‑1 (MQ=255)

                                                                                                                                              aTCCGGGAATTGTATGCTCCTTGTGTGGGTGATAAATGCCGCGTGGCCTGGAATTATATATTGCCGAAACCGTTTTGCAAGGCTTGGATGCT‑CAGTATGGTCGAGTCCTCGAAGTGCCCTCCGGTGCGCAGCAGCGTTTGGAACAggac       <  2:552057/149‑3 (MQ=255)

                                                                                                                                               tCCGGCAATTCTCTGCTCCTGATGAGGGAGCTAAATGCCGCGTGGCCTGGCATCATCAGTTGATCAGACTATATAGCTCCGCTACCA‑GCTACTTTATGGTCGAGTGCTTGGTGTGTGCTCCGGTGCGCAGCAGCGTTGCGAACAGACCg      >  2:340177/1‑149 (MQ=255)

                                                                                                                                                   gCAATTCTCTGCGCCTGCGCAGGGCGCTAAATGCTGCGTGGCGTGGAATTATTGAGTGCCCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTGTGGTAGATTCCTCGAAGTGGCCCGCGGTGCGGAGCAGCGTTTCGAGCAGGCCGACTg  <  2:903680/149‑1 (MQ=255)

AACAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCT‑CAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAACAGGCCGACTG  >  NC_000913_3_hsa_pgi/4218419‑4218714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.