| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | = 1207805 | 14 (0.260) | 16 (0.340) | 14/238 | NT | 49.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_pgi | = 1209602 | 20 (0.430) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
ACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCT > NC_000913_3_hsa_pgi/1209455‑1209749 | aCGTAAATCGGTGAATTTAGTGGTCGGATAAGCCTTTGCCAGTTCCGGGTATTGTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCTAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 2:608783‑M2/1‑148 (MQ=255) ataaGGTAATTTAATTGTCGGATAAGTCTTTGCCAGTCTCGTGTATTCTTCAGCAGAAAAAGCTGCACCATCGAATTTCATCCAGACTGTTGGAGAAGGGGCTGAAGGCTCCGGAACCGGGACACCAACAGGTAATGCAGAGCCTtctc < 2:166391/146‑1 (MQ=255) cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac > 1:253313‑M2/1‑136 (MQ=255) tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCAACGAACCGGGAACCCAACAGGAAATGCAGGCgcctctccctaaccaa < 2:378196‑M2/149‑17 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATg > 2:498993/1‑149 (MQ=255) gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga > 1:523672‑M2/1‑122 (MQ=255) ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag > 1:121693/1‑149 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGGCAGCCTGTTGGCGAAGTGGATAAAGGCCACGGAACCGGGACACCAACAAATAAATCAGAGCCTTCTACCAAAACAACGTTTACTAAAATgataaa > 2:437846/1‑145 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATgaagaa > 1:576600/1‑149 (MQ=255) cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACGCCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcgagagcactttgcacag < 1:64120‑M2/149‑41 (MQ=255) ggTATTCTTCAGCAGAAAAACCGGCACCATTGCATTACAGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCCCGGACCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAACCCAACGCTCATGCAAATGACGAACTAACACGCaagg > 2:499808/1‑147 (MQ=255) gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:93624/149‑1 (MQ=255) ttcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 2:885666/1‑149 (MQ=255) ccttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 2:981451/148‑1 (MQ=255) ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggat < 1:283489‑M2/149‑71 (MQ=255) ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttcgcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggat < 2:805057‑M2/149‑71 (MQ=255) gCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg < 1:498993/149‑1 (MQ=255) aCCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 1:451020/149‑1 (MQ=255) cgttGCATTTCAGCCAGCTTGTTGGCGGAGTGGCTGAAGGCCAATGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAGGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:70474/147‑1 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcc < 1:364395‑M2/149‑89 (MQ=255) gccTGTTGGCGGAGTGGCCGAAGGCCACGGAACCGGGACACCAACAGGTAATGGAGAGccttctccccaacgaaggttttcgagagccttttgcagagtgccatccgagtggatatcgccagacggattcttccggcctaacaccagcg < 2:653352‑M2/149‑92 (MQ=255) cggTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCATATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:615421/147‑1 (MQ=255) cTGTTGGTGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcg > 2:253749‑M2/1‑56 (MQ=255) gTTGGCGGATTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt < 1:417886/149‑1 (MQ=255) gTTGGCGGAATGGATGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt < 1:156591/149‑1 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGCGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaacggattcttgcggcttaacagcagcgcgcgcagtg < 1:415648‑M2/149‑101 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg > 1:776631‑M2/1‑46 (MQ=255) gTGGCTGGAGGCCGCGGAACCGGGACACCGAGAGGTAATTAAGAGccttctcccaaaccaaggttttcgagagccttttgcacagtgccatccgatctgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt > 2:245907‑M2/1‑45 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAACTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGACTATTTACGCGTAt > 2:601274/1‑149 (MQ=255) gacACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 1:117816/147‑1 (MQ=255) ccGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgc < 1:918822‑M2/149‑124 (MQ=255) aacAATAGGTAATGCAGATCCTTCTCGCAAACCAACATTAATAAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGTTGGATTTAACATGCTTATTGGCTATCTACGCGTATCAACAAATGACCAGAACACAGac < 2:360018/147‑2 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTACcaa > 1:215360/1‑128 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTACcaa < 2:215360/128‑1 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcagcttaacagcagcgagcgaagtgcggtaagtaactgttggtaccgacccttctcca < 1:503819‑M2/149‑134 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACCGGTATCAACAAATGACCAGAACACAGAtata > 1:709319/1‑149 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtacctggtcgtgccgccccaactccaa < 1:16304‑M2/149‑135 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccag < 2:540976‑M2/149‑135 (MQ=255) aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggc > 1:630090‑M2/1‑9 (MQ=255) gCAGAGccttctcccaaaccaagggtttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccctcccccaggctggaacc < 2:731018‑M2/149‑144 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcaggccgccccttctccaggctggcaccgg < 2:947043‑M2/149‑146 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaaatacggtaagtaactgatcgtgccgccccatctccaggctggcaccgg < 1:297841‑M2/149‑146 (MQ=255) tcgcctgctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccgga < 2:677864‑M2/147‑147 (MQ=255) agCCTTCTCCCAAACCAACGTTAATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt > 2:585289/1‑149 (MQ=255) | ACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCT > NC_000913_3_hsa_pgi/1209455‑1209749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |