New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	= 1343176	20 (0.370)	3 (0.060)	3/258	NT	11.7%	coding (153/219 nt)	osmB	osmotically and stress inducible lipoprotein
	?	NC_000913_3_hsa_pgi	= 1343184	26 (0.510)					coding (145/219 nt)	osmB	osmotically and stress inducible lipoprotein

TCAGTTATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACAAACATAA  >  NC_000913_3_hsa_pgi/1343040‑1343330                                                                                                                                                 |                                                                                                                                                   tCAGTTATTTCGTACTGAACAGAATCAAGCGTAAAAAAATCAGGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGATCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCACCGGAcagt                                                                                                                                                <  2:925177‑M2/149‑5 (MQ=255)                         tCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACGTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAAGGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCa                                                                                                                        >  2:687125/1‑149 (MQ=255)                           aaGCGTATTATAATTGCGCGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACATCCTCCCATCCGTCACTCCTGCACCTCCTAATGCCCCTGAAcc                                                                                                                      >  2:440612/1‑149 (MQ=255)                                        ttGCGAGTCGATAATCGACATTTATTTACTATTATTTACCGACCGGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCg                                                                                                         <  1:863014/149‑1 (MQ=255)                                                  aTAATCGACATTTATTTACGATTATTTACCGAACTGGTGACCAATAACACCTCCGAAAGCTGCACAACCTAATATACCCAACGAACTCCCATCAGTCAGTACTGCACCCACTAATGCCCCTGACCCCCCGCCGCTTTCGATGTTGCGGt                                                                                               >  2:445061/1‑149 (MQ=255)                                                          cattcattTACGACGATTTACCGACCTGGTGACCAATAACACCTCCTACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTa                                                                                       <  2:696878/149‑1 (MQ=255)                                                                        tattTACCGACCTCGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCCCCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACa                                                                         <  2:691769/149‑1 (MQ=255)                                                                         attTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAg                                                                        <  1:108755/149‑1 (MQ=255)                                                                             acctacctGGTGACCAATAACACCTCCGAGAGCTGCACCACCTAATGTACCCAACGGACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCAc                                                                    <  1:474277/149‑1 (MQ=255)                                                                                    gggTGACCCATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATAGGTAAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAgaga                                                             <  1:211410/148‑1 (MQ=255)                                                                                         aCCAATAACACCTCCGACAGCTGCACCACCTAATGTACCAAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTTCGGTCCCGTTTAGACCAGTTAGAACAGGCACCCCGATACATTg                                                        >  2:403804/1‑149 (MQ=255)                                                                                                acacCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGt                                                 >  1:41124/1‑149 (MQ=255)                                                                                                 cacCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTa                                                >  1:3075/1‑149 (MQ=255)                                                                                                  acCGCCGACAGCTGCCGCACCTAATGTCCCCAACGTACTGCCATAGGTCAGTACGGCACCGCCTAATGCCGCTGCACCCGCGCCGATTGCGGCGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTaa                                               <  2:419760/149‑1 (MQ=255)                                                                                                      ccGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTcagtacgttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatgtcgattatcgactcgcaattataat                                           <  2:318930‑M2/149‑106 (MQ=255)                                                                                                      cagACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGc                                           >  2:318745/3‑149 (MQ=255)                                                                                                       cGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCg                                                                                                         >  1:258519/1‑86 (MQ=255)                                                                                                       cGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCg                                                                                                         <  2:258519/86‑1 (MQ=255)                                                                                                        gACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGACCACTCGCTCAGAGACATTGCCAAAGTAATTGCCa                                         <  1:745999/149‑1 (MQ=255)                                                                                                              tGCACCACCTAATGTACCCAACGTACTGCCATCGGTcagtacgttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatgtcgattatcgactcgcaattataatacgcttga                                   >  1:318930‑M2/1‑36 (MQ=255)                                                                                                                   caccTAATGTACCCAACGTACAGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACACAGAGACATTGCCAAAGTAATTGCCAGAACAGCcgcg                              >  1:290007/1‑149 (MQ=255)                                                                                                                      cTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTc                           >  1:622677/1‑149 (MQ=255)                                                                                                                            tACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCTCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGGCATTGCCAAAGTAGTTCCCAGAACAGCCGCTGTCCttttt                     >  1:790149/1‑149 (MQ=255)                                                                                                                                        tGCCATCGGTCAGTACTGCACCGCCTAATGCCAATCGGGACGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACa         >  1:993952/1‑149 (MQ=255)                                                                                                                                          ccATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAAc                                                                          >  2:341216/1‑82 (MQ=255)                                                                                                                                          ccATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAAc                                                                          <  1:341216/82‑1 (MQ=255)                                                                                                                                          ccATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACaaa       >  1:511602/1‑149 (MQ=255)                                                                                                                                          ccATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTCTTTGCTCGTTACaaa       >  2:426327/1‑149 (MQ=255)                                                                                                                                          ccATCGGCCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTCGACCAGTTAGAACAGGCACTCAGAGCCATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACaaa       >  2:829675/1‑149 (MQ=255)                                                                                                                                          ccATAGGTcagtacgttgggtacattaggtggtgcagctgtcggaggagttattggtcaccaggtcggtaaataatcgtaaataaatgtcgattatcgactcgcaattataatacgcttgattctgttcagtacgaaataactgaataa       <  2:380554‑M2/149‑142 (MQ=255)                                                                                                                                               ggTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACAAACataa  >  1:721555/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TCAGTTATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACAAACATAA  >  NC_000913_3_hsa_pgi/1343040‑1343330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.