| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 1395541 | 9 (0.230) | 43 (1.110) | 39/280 | 0.1 | 82.7% | coding (382/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance |
| ? | NC_000913_3_KO_pgi | 1427777 = | 9 (0.230) | coding (950/981 nt) | insH1 | IS5 transposase and trans‑activator | |||||
GAAATAGAGCATAATCCCGGAAAAGAAGTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGACATAATCCGCGCACTGGTGATATCGCGACCTTTTTTAATCTGCTGTTTTTCAAACTGATTAATCAGCAGAAATAGCTTAATCGTCAGAATAACCGCAATCAGGGACGTACAGATAAA > NC_000913_3_KO_pgi/1395398‑1395685 | gAAATAGAGCATAATCCCGGAAAAGAAGTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtc < 1:281857‑M1/149‑6 (MQ=255) aaaTAGAGCATAATCCCGGAAAAGAAGTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtcc > 1:552927‑M1/1‑143 (MQ=255) agagCATAATCCCGGAAAAGAAGTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccaccc < 1:366714‑M1/149‑11 (MQ=255) agCATAATCCCGGAAAAGAAGTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccga < 2:552927‑M1/149‑13 (MQ=255) gCATAATCCCGGAAAAGAAGGTACTCAGAATATCTTTACCGGCCATAACGACAGCCAGACCACCAATACCAACCAAGGTCAGCAAGCCAGAAAACATCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCAAtggtcaccccgac > 2:177970‑M1/1‑136 (MQ=255) tCCCGGAAAAGAAGTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACAATAATGGTGATTTtgatg > 1:547751/1‑149 (MQ=255) ccGGAAAAGAAGTTACTCCGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAAAACCACCAAAGATCAGCAAGCCAGAAAGGCTCATGCCGAAAAGCTCGCCATCACGCAACACAACCACCACAACAATTGTCACTTTgatgat > 2:4445/1‑149 (MQ=255) agaatTTACTCAGAAAGTCTTTACCGGCCATATACACAGCCAAACCAACAAAACCACCAACGGTCAGCAAGGTAGAAAGGCTCATGGCGATATGTTCGCTAGAAAGCAGAACAAGCATCACAATAATGGTGATTTTGATGATACGCGAc < 2:61461/149‑1 (MQ=255) agaagTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGAc < 2:547751/149‑1 (MQ=255) tttACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAATAAATAttttccacccgcaaaaggatttccagggtgaataacatcgccagttg > 1:504228‑M1/1‑102 (MQ=255) gagcggcAATAGCGACACCCAGACGAACAATACCACCAGAGGTAAGCAAGCCAGAAAGGCTCATGCCGAAATGTTTGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggt < 2:345964‑M1/146‑50 (MQ=255) ccGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagtt < 2:334292‑M1/144‑47 (MQ=255) ccGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagtt > 1:334292‑M1/1‑98 (MQ=255) gCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcg > 2:218822‑M1/1‑95 (MQ=255) aTACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgttt < 1:585153‑M1/149‑58 (MQ=255) ccGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCCACACttatccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttc > 1:161859‑M1/1‑89 (MQ=255) cAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccc > 1:84617‑M1/1‑81 (MQ=255) caccaATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagccgccacttgt > 1:219549‑M1/1‑76 (MQ=255) caccaATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagca > 1:502135‑M1/1‑76 (MQ=255) caccaATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagca < 2:502135‑M1/140‑65 (MQ=255) aaTACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatct < 2:84617‑M1/149‑78 (MQ=255) aaTACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatct > 1:413538‑M1/1‑72 (MQ=255) accaccAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggc < 1:9516‑M1/149‑81 (MQ=255) caccaAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctt > 2:243991‑M1/1‑67 (MQ=255) caccaAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataa < 2:533741‑M1/102‑36 (MQ=255) caccaAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataa > 1:533741‑M1/1‑67 (MQ=255) aaaGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttcac > 1:458448‑M1/1‑63 (MQ=255) aaGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttca > 2:540145‑M1/1‑62 (MQ=255) aaGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttca < 1:540145‑M1/147‑86 (MQ=255) agtCAGCAAGCAAGAAGGGGTAGTGCACATATGTTGTCCATAAAGCAGAACAAGCACCACtggtccagccgaaacaggttggccagggtgaattacatcgccagttggttatcgtttttcagcagccccttgtatctggctttcacgaa < 2:32847‑M1/148‑90 (MQ=255) tCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgcca > 1:554524‑M1/1‑58 (MQ=255) tCAGCAAGCCAGAAAGCCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgcca < 2:554524‑M1/101‑44 (MQ=255) cAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGACATAATCCGCGCACTGGTGATATCGCGACCTTTTTTAATCTGCTGTTTTTCAAACTGATTAATcagca > 1:44864/1‑149 (MQ=255) aaGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttcacgaagccgaac < 1:243991‑M1/149‑97 (MQ=255) aGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagcccctt < 2:178032‑M1/123‑72 (MQ=255) aGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagcccctt > 1:178032‑M1/1‑52 (MQ=255) ccAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttg < 1:307733‑M1/71‑22 (MQ=255) ccAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttg > 2:307733‑M1/1‑50 (MQ=255) ccAGAAAGGCTCACGACGAAATGTGCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttcacgaagccgaactgc < 1:503104‑M1/149‑100 (MQ=255) aaGGCTCAGGCCGAAATGTACGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttcgcccgggtgaataacttcgccaggtggttatcgtttttcagcagccccttgtatctggctttcacgaagccgaactgccgctt < 1:313283‑M1/149‑105 (MQ=255) tCATGCGGAAATGTTCGCCATAAAGCAGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGACATAATCCGCGCACTGGTGATATCGCGACCTTTTTTAATCTGCTGTTTTTCAAACTGATTAATCAGCAGAAATAGCTTAATc < 2:670144/149‑1 (MQ=255) aTGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggtcagggtgaataacatcgccagttggttatc > 2:377361‑M1/1‑38 (MQ=255) aTGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggtcagggtgaataacatcgccagttggttatc < 1:377361‑M1/91‑54 (MQ=255) aTGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttcacgaagccgaactgccgcttgctgatc < 2:529206‑M1/149‑112 (MQ=255) cGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcg < 1:171961‑M1/88‑55 (MQ=255) cGAAATGTTCGCCATAAAGCAGAACAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcg > 2:171961‑M1/1‑34 (MQ=255) aTAAAGCAGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGACATAATCCGCGCACTGGTGATATCGCGACCTTTTTTAATCTGCTGTTTTTCAAACTGATTAATCAGCAGAAATAGCTTAATCGTCAGAATAACCGCAATCa > 2:681775/1‑149 (MQ=255) tAAAGCAGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGACATAATCCGCGCACTGGTGATATCGCGACCTTTTTTAATCTGCTGTTTTTCAAACTGATTAATCAGCAGAAATAGCTTAATCGTCAGAATAACCGCAATCAg < 1:681775/149‑1 (MQ=255) aGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGACATAATCCGCGCACTGGTGATATCGCGACCTTTTTTAATCTGCTGTTTTTCAAACTGATTAATCAGCAGAAATAGCTTAATCGTCAGAATAACCGCAATCAGGGACGt < 1:432836/149‑1 (MQ=255) aaCAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttcacgaagccgaactgccgcttgatgatgcgaaacgggtgctccaccctggcacg > 2:460333‑M1/1‑12 (MQ=255) aCAAGCACCACtggtccacccgaaacaggttggccagggtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggctttcacgaagccgaactgccgcttgatgatgcgaaacgggtgctccaccctggcacgg > 1:495602‑M1/1‑11 (MQ=255) cccactcgtccaccctaaagagtttggccagtgtgaataacatcgccagttggttatcgtttttcagcagccccttgtatctggcttgcacgaagccgaactgcccgacgattatccgacacgagtgctccaccctggcacggatgctc < 1:652257‑M1/148‑145 (MQ=255) | GAAATAGAGCATAATCCCGGAAAAGAAGTTACTCAGAATATCTTTACCGGCCATACCGACAGCCAGACCACCAATACCACCAAAGGTCAGCAAGCCAGAAAGGCTCATGCCGAAATGTTCGCCATAAAGCAGAACAAGCACCACAATAATGGTGATTTTGATGATACGCGACATAATCCGCGCACTGGTGATATCGCGACCTTTTTTAATCTGCTGTTTTTCAAACTGATTAATCAGCAGAAATAGCTTAATCGTCAGAATAACCGCAATCAGGGACGTACAGATAAA > NC_000913_3_KO_pgi/1395398‑1395685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |