New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4094664	59 (1.490)	5 (0.200) +ATTGATTGCCGGATGCGGCACAAGTGCCTTATCCGGCCTACAGGTCGGCAATAG	3/174	3.9	12.1%	noncoding (349/402 nt)	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	NC_000913_3_pae_pgi	= 4284640	NA (NA)					intergenic (‑167/+33)	yjcH/acs	DUF485 family inner membrane protein/acetyl‑CoA synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTAGGGATTGTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCAATTTTGCGC  >  NC_000913_3_pae_pgi/4284494‑4284787                                                                                                                                                   |                                                                                                                                                    tGTAGGGATTGTTTTAATTCCCGCTCCCTGATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAAc                                                                                                                                                   <  2:619238/149‑1 (MQ=255)   tAGGGATTGTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTTCGCCTCATCCGGCAATAAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCg                                                                                                                                                 <  1:99107/149‑1 (MQ=255)   tAGGGATTGTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCg                                                                                                                                                 >  1:402890/1‑149 (MQ=255)    ttggATTGTTTGAATTCCCGCGCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGt                                                                                                                                                <  2:306768/147‑1 (MQ=255)       gATTGTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAc                                                                                                                                             <  1:154397/149‑1 (MQ=255)       gATTGTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGATCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACCAACCGttcc                                                                                                                                             >  1:512325/1‑147 (MQ=255)            ttttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACt                                                                                                                                        >  2:239338/1‑149 (MQ=255)            ttttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACt                                                                                                                                        >  1:51921/1‑149 (MQ=255)            ttttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCAGAATGTAACACAGAGAAGGCGTGTACTGCGCATGTGGCATACAAGGCCGTATACGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACt                                                                                                                                        >  2:321032/1‑149 (MQ=255)                    cccGGTCCATTATGGGCGAAGGTTACCCCTCGCATACCACTTGCCGGATCTAGGAAACGTAATTTGTTTACTGCGCAGCGCTTAATCAATTCCTGATTCGACGCTGTCTCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCgg                                                                                                                                <  2:60969/149‑1 (MQ=255)                              gaTGGGAGAAGGTGAACGCTCGGTTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTgg                                                                                                                      <  2:66059/148‑1 (MQ=255)                               aTGGGAGAAGGTTAACGCTCGGGTACCCCTTGCCGAATGTAGGCAGGATCAGGGGTTTACGCCGCATCCGGCAATCAATGCCTGAGGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                                                                                                                     <  2:146155/149‑1 (MQ=37)                               aTGGGAGAAGGGTAACGGTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                                                                                                                     <  2:205524/149‑1 (MQ=255)                                tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGt                                                                                                                    <  1:424067/149‑1 (MQ=255)                                 gggAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTAGCGTCGGGCAGTTGTGGGtt                                                                                                                   >  2:302676/1‑149 (MQ=255)                                   gagaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTAc                                                                                                                 >  1:393905/1‑149 (MQ=255)                                         gTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGc                                                                                                           >  1:387668/1‑149 (MQ=255)                                                 tCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGAt                                                                                                   <  1:422954/149‑1 (MQ=255)                                                    ggTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGc                                                                                                <  1:410123/149‑1 (MQ=255)                                                          ccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTACtt                                                                                          >  1:228860/1‑149 (MQ=255)                                                               ccGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCtt                                                                                     <  1:382972/149‑1 (MQ=255)                                                                  aaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGAACGCGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCaa                                                                                  >  1:573215/1‑149 (MQ=255)                                                                       aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAagcagc                                                                             <  1:488342/149‑1 (MQ=255)                                                                        ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCt                                                                            >  2:642388/1‑149 (MQ=255)                                                                        ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCt                                                                            >  2:30437/1‑149 (MQ=255)                                                                            ggATAAGGCGTTTACGCGGCATCCGGCAATCAATGCCTGCTGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTtctc                                                                        <  1:93750/149‑1 (MQ=255)                                                                            ggATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTtctc                                                                        <  1:321032/149‑1 (MQ=255)                                                                            ggATAAGGCGTTTACGCCCCACCCGTCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTtctc                                                                        <  1:37903/149‑1 (MQ=255)                                                                              aTAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGa                                                                      >  2:28139/1‑149 (MQ=255)                                                                                     ggtcatgccgcATCGGGCAATCACTGCCTGTTGCGACGCTGGCGGGTGTTATCATGCCTACAAACCGTTACCGACTCGCATCGGGCGATTGTGGGTTGCGATGGGGTCGCGATAGTCTGCTTCTCTTCAGGCTGCTTCTCGACTACGcc                                                               <  2:496544/143‑1 (MQ=255)                                                                                         aCGCCGCATCGGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTCATCAGGCCTACAACCCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGa                                                           <  1:204563/149‑1 (MQ=255)                                                                                          cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGAt                                                          >  1:586805/1‑149 (MQ=255)                                                                                             cgcATCCGGCAATCAATGCCTCATGCCACGCTGTCGCGTCCTCTTAGGCCGACAAACTGTTACCCCATTACGATGGTCATTTGCCGCAGGCTGCGTCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCgg                                                       <  1:163625/149‑1 (MQ=12)                                                                                                aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTACATCGCTTGTATTAGCTTCTCGACTACGCCAGGATCGGCaa                                                    <  1:685467/149‑1 (MQ=37)                                                                                                        atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAg                                            <  1:30437/149‑1 (MQ=255)                                                                                                        atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAg                                            >  2:317807/1‑149 (MQ=255)                                                                                                        atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACAGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCGTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAg                                            <  1:160055/149‑1 (MQ=255)                                                                                                                cTGATGCGACGCTGTCGCGTCTTATCCGGCGTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCCGGATCGGCAAGCGTCGCGGTATCGcc                                    >  1:685988/1‑149 (MQ=255)                                                                                                                cTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTATTACAGCAGCTTCTCGCCTCCGCCAGGATCTGCAAGCGTCTAGTGATCGcc                                    >  2:653992/1‑149 (MQ=38)                                                                                                                   aTGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAg                                 <  2:412095/149‑1 (MQ=255)                                                                                                                       gACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTg                             >  2:88017/1‑149 (MQ=255)                                                                                                                             gTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTa                       <  1:89177/149‑1 (MQ=255)                                                                                                                                                 cAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCTATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCAATTTTgcg   >  1:567035/1‑149 (MQ=255)                                                                                                                                                  aaaCCGTTACCGAATCGCATCGGGCAATTGTGGGTTACGATGGAATGGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTAGATTACGCCAGGATCGGCAAGCGTCGAGGTATGGCCCAGGTTGCTGGGATCGCCCGCCGCAATTTTgggc  >  2:147540/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGTAGGGATTGTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCAATTTTGCGC  >  NC_000913_3_pae_pgi/4284494‑4284787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.