| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 3221823 = | 24 (0.820) | 5 (0.180) | 4/266 | 3.5 | 15.2% | coding (358/984 nt) | ebgR | transcriptional repressor |
| ? | NC_000913_3_pae_pgi | 3221880 = | 33 (1.190) | coding (415/984 nt) | ebgR | transcriptional repressor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGA > NC_000913_3_pae_pgi/3221681‑3221965 | gcagGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCg > 1:333062/1‑149 (MQ=255) gAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCCCCGGTATTTTAATTGTCGGCaa > 1:211515/1‑149 (MQ=255) tGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAAccc > 1:228704/1‑149 (MQ=255) aTCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGACATTATGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCAcgcc > 1:360283/1‑149 (MQ=255) aaCGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCAcgaaggc > 1:247212/1‑144 (MQ=255) ggCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa > 2:471740/1‑149 (MQ=255) ccccGTGCGAAAACCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGTTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGt < 1:432802/149‑1 (MQ=255) ccAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCACCGGCCTACTTGCGCGCCGCTGCCAGCGCGTTGACCGACAAGATCTGtt > 1:227647/1‑149 (MQ=255) aGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAGACCCACGCCCGCCCTGCGCGCCGCTGCCAACGCGTTGACCGACAATATCTGTTTTATCGACttt > 2:416054/1‑149 (MQ=255) aCCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATAGACTTTCACGAACCCGGCAGCgg > 1:321532/1‑149 (MQ=255) cAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGtt > 2:350252/1‑149 (MQ=255) aaCGGTTATGAACACAGCGGCTTATCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTa < 2:170502/149‑1 (MQ=255) aTGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCAGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCg > 2:56510/1‑149 (MQ=255) aGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCAcgcc < 1:11236/59‑1 (MQ=255) aGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCAcgcc > 2:11236/1‑59 (MQ=255) ggCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGGTACGCTGCGGTGGCTATCGa > 2:359998/1‑149 (MQ=255) cTTACCAGACATTAACAACGTCACCGGTCTTTTAATTGTCGGCAACCCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTCGAACGATCGTATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATc < 1:305442/149‑1 (MQ=255) ttACCAGACATTAAAATCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCt < 2:227647/149‑1 (MQ=255) gACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGCATATCGATCTGGCACg > 2:333359/1‑149 (MQ=255) tAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCa < 2:8409/149‑1 (MQ=255) aaaaCCTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCCCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGt < 1:145568/149‑1 (MQ=255) aCGTCCCCGGTATGTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTaaa < 2:48464/149‑1 (MQ=255) aCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCTGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTaaa < 2:333062/149‑1 (MQ=255) aTTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGa < 2:228704/149‑1 (MQ=255) aTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCa < 2:168913/77‑1 (MQ=255) aTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCa > 1:168913/1‑77 (MQ=255) | GCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGA > NC_000913_3_pae_pgi/3221681‑3221965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |