New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 2304653	32 (1.190)	5 (0.200)	5/268	2.8	18.1%	noncoding (237/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_pae_pgi	= 2304895	15 (0.590)					noncoding (479/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Frequency below/above cutoff threshold.

CGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTC  >  NC_000913_3_pae_pgi/2304509‑2304799                                                                                                                                                 |                                                                                                                                                   cGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                                                                                                                <  1:165397/149‑1 (MQ=255) cGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                                                                                                                <  1:20753/149‑1 (MQ=255) cGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                                                                                                                <  1:21023/149‑1 (MQ=255)   cTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGAGGCTTAACAGGCCTACACGGCTGTGAAGTGCTCCACCCCGTAGGTCGGCTAAGGCg                                                                                                                                              >  1:115548/1‑149 (MQ=14)    tgtgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCgg                                                                                                                                             >  2:360037/1‑149 (MQ=40)    tgtgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCgg                                                                                                                                             >  1:245498/1‑149 (MQ=40)    tgtgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCgg                                                                                                                                             <  1:261924/149‑1 (MQ=255)    cgtgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCgg                                                                                                                                             <  1:416260/148‑1 (MQ=255)     gtgAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGt                                                                                                                                            >  1:385783/1‑149 (MQ=39)          gTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGACGCGACGCTGGCGCGTCTTATCAGGCCTACCCCGCTGTGAAGTGCTCCACCCCGTAGGCCGGATAAGGCGGTTAcgc                                                                                                                                       >  1:316967/1‑149 (MQ=255)           tGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgcc                                                                                                                                      <  2:117199/149‑1 (MQ=255)               gCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCAAGCAACCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCGCCCCGCAAGCCGGGTCACGCGAGTAcgccgcgt                                                                                                                                  >  1:235311/1‑147 (MQ=11)               gCAACCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTAcgcccgat                                                                                                                                  >  1:72107/1‑145 (MQ=255)                   cccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCg                                                                                                                                              >  2:91489/1‑133 (MQ=40)                   cccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCg                                                                                                                                              <  1:91489/133‑1 (MQ=255)                    ccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATgcggcgtaaccgccttatccgac                                                                                                                             <  1:94708‑M1/149‑24 (MQ=255)                     cGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACa                                                                                                                            <  2:128383/149‑1 (MQ=255)                       tAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATc                                                                                                                          <  2:17995/149‑1 (MQ=255)                          gTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTaa                                                                                                                       <  1:402203/149‑1 (MQ=40)                           tCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAAc                                                                                                                      <  1:409820/149‑1 (MQ=39)                                 aaGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCCGTTACGCCGCATCCGACATCTAACGccccc                                                                                                                >  1:35301/1‑147 (MQ=25)                                       ggcaggccgcATCCGACATCCAGCGCCCGGGGCGGTTGCGTGTTGCGACGGTGGCGCGTATTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTTGGTGGGATAAGTCGTTTACGCCGCTTCCGACATCTAACGCCCAAGCCGGt                                                                                                          <  2:334988/144‑1 (MQ=11)                                        ggcagccgcATCGGGCGTCCAACGCCCGGGCCGGGGGCCTGAGGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGACAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGtt                                                                                                         <  2:334081/145‑1 (MQ=11)                                           cgccgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGcc                                                                                                      <  1:360037/149‑1 (MQ=32)                                              cgcATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAGCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGCAACGCCTCATCCGACATCTAACGCCCAAGCCGGTTGCCTGa                                                                                                   <  2:342734/149‑1 (MQ=255)                                                cATCCGACATCCAACGCCCGAGCCGGTTGCCGGATGCGACGCTGGCGCGGCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGAAGGGCGGACCCGGCTGTTGCGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATg                                                                                                 <  1:113043/149‑1 (MQ=11)                                                    cGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGGAGTGCTCCACCCCGTAGGTCGGAAAAGGCGGTTACGCAGCAACCGACATCTGACACCCCAGCCCGTTGCCTGATCCgcc                                                                                             >  2:257094/1‑147 (MQ=11)                                                     gACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACCCCCCTGCGAAATGCTCCACCCCGTAGGCCGGAAAAAGCGGTTAGGCGGCATCCGACATCCAACGCCCAAGCCGGCTGCCTGGTGCgccc                                                                                            >  2:72124/1‑146 (MQ=11)                                                          ccAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGgc                                                                                       >  2:305018/1‑149 (MQ=32)                                                                   gAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATgcggcgtaaccgccttatccgacctacggggt                                                                                                                    >  2:259238‑M1/1‑79 (MQ=255)                                                                   gAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATgcggcgtaaccgccttatccgacctacggggt                                                                                                                    <  1:259238‑M1/111‑33 (MQ=255)                                                                                        gCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATgcggcgtaaccgccttatc                                                                                                                                 <  2:278172‑M1/77‑20 (MQ=255)                                                                                        gCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATgcggcgtaaccgccttatc                                                                                                                                 >  1:278172‑M1/1‑58 (MQ=255)                                                                                                                                    cccGTAGGCCGGATAAGTCGGTTAGGCCGCAGCCGCCATCCAACGCCCGAGCCAGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGa             <  2:413820/149‑1 (MQ=11)                                                                                                                                        tAGGTCGGGTAAGGCGGTTACGCCGAATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATc         <  1:317861/149‑1 (MQ=17)                                                                                                                                            tCGGATgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcc                                                                                           <  2:134516‑M1/63‑58 (MQ=255)                                                                                                                                            tCGGATgcggcgtaaccgccttatccgacctacggggtggagcacttcacagcggtgtaggcc                                                                                           >  1:134516‑M1/1‑6 (MQ=255)                                                                                                                                            tCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAAc     >  1:418062/1‑149 (MQ=34)                                                                                                                                               gATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGATTGCCTAATACGACGCTGGCGCGTCTCAACAGGCCTACACCGCCTCGAACTACCCCACCCCGCAGGATGGATACGGCGACTACACCACCTCCAACATCCAACGTc  >  2:350744/1‑149 (MQ=2)                                                                                                                                                 |                                                                                                                                                   CGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTC  >  NC_000913_3_pae_pgi/2304509‑2304799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.