Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_pae_pgi	3,440,077	Δ11 bp	coding (943‑953/990 nt)	rpoA ←	RNA polymerase, alpha subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_pgi	3440077	3440087	11	70 [0]	[0] 70	rpoA	RNA polymerase, alpha subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3440076	0 (0.000)	68 (1.160)	56/274	0.1	100%	coding (954/990 nt)	rpoA	RNA polymerase, alpha subunit
	?	NC_000913_3_pae_pgi	3440088 =	0 (0.000)					coding (942/990 nt)	rpoA	RNA polymerase, alpha subunit

CATATTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGC  >  NC_000913_3_pae_pgi/3439928‑3440216                                                                                                                                                     |                                                                                                                                             cATTTTGCGGAACAGAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAATCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCC                                                                                                                                              <  2:473625‑M1/149‑1 (MQ=255) cATATTGCGGAACAGACGCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCC                                                                                                                                              <  2:435977‑M1/149‑1 (MQ=255)   gattGCGGAAAATAGCCTGGCGATGGCTGCTGTTGCGTTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCca                                                                                                                                            <  2:174302‑M1/148‑3 (MQ=255)            aCATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCCTTACCTTTCATAAGCAGCCAGGGCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtc                                                                                                                                   <  1:780070‑M1/149‑12 (MQ=255)                 gCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgg                                                                                                                              <  1:375020‑M1/149‑17 (MQ=255)                           ggCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagca                                                                                                                    <  2:109548‑M1/149‑27 (MQ=255)                            gctgctGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcac                                                                                                                   >  1:962232‑M1/1‑122 (MQ=255)                              tgctgTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACGTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtgcacgggaagccagcacgt                                                                                                                 >  1:6707‑M1/1‑120 (MQ=255)                                   ttGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtcttta                                                                                                            <  2:962232‑M1/149‑35 (MQ=255)                                                gacgacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagag                                                                                               <  1:347777‑M1/149‑48 (MQ=255)                                                 acgacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatcccagtaagaga                                                                                              >  1:50991‑M1/1‑101 (MQ=255)                                                   gacCACTTGTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagatt                                                                                            <  2:767085‑M1/149‑51 (MQ=255)                                                    acCACTCTTACGATGGTGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattt                                                                                           <  2:837828‑M1/149‑52 (MQ=255)                                                    acCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgg                                                                                                                              >  2:676249‑M1/1‑98 (MQ=255)                                                    acCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgg                                                                                                                              <  1:676249‑M1/114‑17 (MQ=255)                                                         tctTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctca                                                                                                      >  1:973894‑M1/1‑93 (MQ=255)                                                         tctTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctca                                                                                                      <  2:973894‑M1/133‑41 (MQ=255)                                                          ctTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccag                                                                                                                      <  2:678834‑M1/116‑25 (MQ=255)                                                          ctTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccag                                                                                                                      >  1:678834‑M1/1‑92 (MQ=255)                                                             aCGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagatttttta                                                                                       >  1:859417‑M1/1‑89 (MQ=255)                                                             aCGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagatttttta                                                                                       <  2:859417‑M1/144‑56 (MQ=255)                                                               gATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacggctttaatctcagtaagaggttttttaccaaggt                                                                                >  1:348830‑M1/1‑87 (MQ=255)                                                               gATGGCGCATGACCTTATCCTTCTAAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccactggaagccagcacgtctttaatctcagtgagagcttttttgccaaggt                                                                                >  2:192093‑M1/1‑87 (MQ=255)                                                               gATGGCGCAAGACCTTATCCTTCTCAGTAAAACCTTCACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagtcagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggt                                                                                <  1:301610‑M1/149‑63 (MQ=255)                                                                aTGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagactgtccacgggaagccagcacgtctttaatctcagtaagagattttttacccaggtt                                                                               >  2:480024‑M1/1‑86 (MQ=255)                                                                            cTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaag                                                                   >  1:994677‑M1/1‑74 (MQ=255)                                                                             ttATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaagg                                                                  >  1:316713‑M1/1‑73 (MQ=255)                                                                              tacccttcTCAGTAAGACTTTAACCTGTGATCCGGTTACTCATTAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaagga                                                                 <  2:576621‑M1/146‑78 (MQ=255)                                                                              tATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctca                                                                                                      >  1:33370‑M1/1‑72 (MQ=255)                                                                              tATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctca                                                                                                      <  2:33370‑M1/112‑41 (MQ=255)                                                                                tCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGAAGCCAGCTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggcgc                                                               >  1:420371‑M1/1‑70 (MQ=255)                                                                                 ccTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagct                                                              >  2:901654‑M1/1‑69 (MQ=255)                                                                                       cAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacct                                                        <  1:604359‑M1/149‑87 (MQ=255)                                                                                        aGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagaaagagattttttaccaaggttaggcgttttaaggagctcaacctc                                                       >  1:718423‑M1/1‑62 (MQ=255)                                                                                         gTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagtcagcacgtctttaatct                                                                                                        <  2:752334‑M1/99‑39 (MQ=255)                                                                                         gTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagtcagcacgtctttaatct                                                                                                        >  1:752334‑M1/1‑61 (MQ=255)                                                                                         gTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcg                                                      <  1:901654‑M1/149‑89 (MQ=255)                                                                                          tAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggag                                                                <  2:829156‑M1/138‑79 (MQ=255)                                                                                          tAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggag                                                                >  1:829156‑M1/1‑60 (MQ=255)                                                                                             aaCCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaag                                                                   <  1:42209‑M1/132‑76 (MQ=255)                                                                                             aaCCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaag                                                                   >  2:42209‑M1/1‑57 (MQ=255)                                                                                                 ttAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctg                                              >  1:1036598‑M1/1‑53 (MQ=255)                                                                                                       tgtgATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccag                                        >  1:380308‑M1/1‑47 (MQ=255)                                                                                                           aTCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGCTTTCCcagagacagtccacgaaaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatca                                    >  1:334325‑M1/1‑43 (MQ=255)                                                                                                             ccGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttaccatcttctcaacctcggtacgctgtaccagatcacc                                  <  1:1039524‑M1/149‑109 (MQ=255)                                                                                                               ggTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccga                                <  1:162393‑M1/149‑111 (MQ=255)                                                                                                                gTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaag                                                                   <  1:992173‑M1/113‑76 (MQ=255)                                                                                                                gTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaag                                                                   >  2:992173‑M1/1‑38 (MQ=255)                                                                                                                   aCTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatata                            <  2:994677‑M1/149‑115 (MQ=255)                                                                                                                   aCTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtacacatgaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatata                            <  1:1027148‑M1/149‑115 (MQ=255)                                                                                                                     tCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagt                          >  1:537986‑M1/1‑33 (MQ=255)                                                                                                                     tCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagt                          >  2:438208‑M1/1‑33 (MQ=255)                                                                                                                     tCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacaggccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagt                          <  1:382833‑M1/149‑117 (MQ=255)                                                                                                                       gTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtgg                        >  2:185259‑M1/1‑31 (MQ=255)                                                                                                                       gTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtgg                        >  2:716448‑M1/1‑31 (MQ=255)                                                                                                                          aGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagggattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctttaccagatgaccgatagagtggatg                     >  1:37655‑M1/1‑28 (MQ=255)                                                                                                                          aGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggata                     <  1:438208‑M1/149‑122 (MQ=255)                                                                                                                          aGCGACGCTTGCCGGTTGCAAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggata                     <  2:6707‑M1/149‑122 (MQ=255)                                                                                                                           gCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggcgctaaccctcggtacgctgtaccagatcaccgatatagtggatag                    >  1:725487‑M1/1‑27 (MQ=255)                                                                                                                           gCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatag                    >  1:936504‑M1/1‑27 (MQ=255)                                                                                                                             gATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagct                  <  2:380308‑M1/149‑125 (MQ=255)                                                                                                                                gCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttct               >  1:975549‑M1/1‑22 (MQ=255)                                                                                                                                gCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccaga                                       <  2:348960‑M1/125‑104 (MQ=255)                                                                                                                                gCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccaga                                       >  1:348960‑M1/1‑22 (MQ=255)                                                                                                                                 cgtgcCGGTGGCCAGTTTTCTcacagacagtcaacgggaagccagcatgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctg              <  1:889863‑M1/147‑129 (MQ=255)                                                                                                                                  ttGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatcgcttctgc             >  2:387234‑M1/1‑20 (MQ=255)                                                                                                                                  ttGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgc             >  2:926913‑M1/1‑20 (MQ=255)                                                                                                                                           gCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggca    <  2:537986‑M1/149‑139 (MQ=255)                                                                                                                                             cAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagt  >  2:202728‑M1/1‑9 (MQ=255)                                                                                                                                             cAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagt  >  2:599157‑M1/1‑9 (MQ=255)                                                                                                                                                     |                                                                                                                                             CATATTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGC  >  NC_000913_3_pae_pgi/3439928‑3440216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑