| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 3375666 = | 19 (1.040) | 4 (0.230) | 4/272 | 1.9 | 18.6% | coding (798/1368 nt) | dcuD | putative transporter |
| ? | NC_000913_3_vch_pgi | 3375686 = | 17 (0.980) | coding (818/1368 nt) | dcuD | putative transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTTTTGACAAAAAAGATAAAAATATCAATCACGAACAGGCAGAGCAAAAAGCTCTCGATAATGTCCCGCCGCTCTATTACGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAA > NC_000913_3_vch_pgi/3375520‑3375812 | gacacacagcgttaacacgtgggcaaactgctgacccatgccgtcaaaaaacgcctgcacatcgtccattgtttcgcgcaagttatgcttgcggaagaactcaacaaacatcgtcacagtcaaactcagtaacatcaccaccaccaGAt > 2:48005‑M1/147‑149 (MQ=255) tttGACAAAAAAGATAAAAATATCAATCACGAACAGGCAGAGCAAAAAGCTCTCGATAATGTCCCGCCGCTCTATTACGCCATTTTACCTGTGATGCCGTTAATACTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCa < 1:208487/149‑1 (MQ=255) ccagcgttaccacgttggcaaactgcgtacccatgccgtcaaaaaacgcctgcacatcgtccattgtttcgcgcaagtaatgcttgcggaagaactgaacaaacatcgtcacagtcaaactcagtaacatcaccaccaccaGATGCAGt < 1:299042‑M1/8‑1 (MQ=255) aaaGATAAGAATATCGATCACGAACAGGCAGAGCAAAAAGCTCTCGATAATGTCCCGCCGCTCTATTACGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACt < 2:193683/149‑1 (MQ=255) tAAAACTATCAATCACGAACAGGCAGAGCAAAAAGCTCTCGATAATGTCCCGCCGCTCTATTACGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATc < 1:21403/149‑1 (MQ=255) aatcaCGAACAGGCAGAGCAAAAAGCTCTCGATAATGTCCCGCCGCTCTATTACGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTggtggtggt < 2:111458/149‑1 (MQ=255) ggCAGAGCAAAAAGCTCTCGATAATGTCCCGCCGCTCTATTACGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGa < 1:197447/149‑1 (MQ=255) cAGAGCAAAAAGCTCTCGATAATGTCCCGGCGCTCTATTACGCCATTTTACCTGCGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGt < 1:278390/149‑1 (MQ=255) aaaaaacgcctgcacatcgtccattgtttcgcgcaagttatgcttgcggaagaactcaacaaacatcgtcacagtcaaactcagtaacatcaccaccaccaGATGCAGTCAGAACTGCATCtgg > 1:243026‑M1/102‑124 (MQ=255) aaaaaacgcctgcacatcgtccattgtttcgcgcaagttatgcttgcggaagaactcaacaaacatcgtcacagtcaaactcagtaacatcaccaccaccaGATGCAGTCAGAACTGCATCtgg < 2:243026‑M1/23‑1 (MQ=255) ccgccgCTCTATTACGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGtt > 2:186159/1‑149 (MQ=255) cGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCCGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCGTa > 1:303368/1‑149 (MQ=255) cATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGAGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTGTGTTGAGTTCTTCCGCAAGCATAACt > 1:210261/1‑149 (MQ=255) ttATCTGTGATGCCGTTAAGCCGGATGCTCGGCTCGCTGTTCCTCGTCCACGTCGGGCTTATGCAGATAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGCCGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTgcg < 2:159430/149‑1 (MQ=255) tgtgATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTGTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGaaa > 1:200949/1‑149 (MQ=255) ccTGATGCTAGTTTCGATGGACCTCGCCAACGTCGGGCCGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGc < 1:140703/149‑1 (MQ=255) cTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGcg > 1:99042/1‑148 (MQ=255) cTGATGCCCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGCa < 1:255360/149‑1 (MQ=255) actcagtaacatcaccaccaccaGATGCAGTCAGAACTGCATCtggtg < 1:25605‑M1/25‑1 (MQ=255) actcagtaacatcaccaccaccaGATGCAGTCAGAACTGCATCtggtg > 2:25605‑M1/24‑48 (MQ=255) ttCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCAt < 1:186159/149‑1 (MQ=255) cTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATggg > 1:117323/1‑149 (MQ=255) aCGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAg < 1:304682/149‑1 (MQ=255) gCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCATCCTACTATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCa < 1:144385/149‑1 (MQ=255) cTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGCGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCCGTTTGccca > 2:185917/1‑147 (MQ=255) | GCTTTTGACAAAAAAGATAAAAATATCAATCACGAACAGGCAGAGCAAAAAGCTCTCGATAATGTCCCGCCGCTCTATTACGCCATTTTACCTGTGATGCCGTTAATCCTGATGCTCGGCTCGCTGTTCCTCGCCCACGTCGGGCTGATGCAGTCAGAACTGCATCTGGTGGTGGTGATGTTACTGAGTTTGACTGTGACGATGTTTGTTGAGTTCTTCCGCAAGCATAACTTGCGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAA > NC_000913_3_vch_pgi/3375520‑3375812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |