New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	4168332 =	8 (0.440)	3 (0.180)	3/268	2.3	30.9%	intergenic (+132/‑40)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
	?	NC_000913_3_vch_pgi	4168374 =	6 (0.350)					noncoding (3/76 nt)	gltT	tRNA‑Glu

CCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCT  >  NC_000913_3_vch_pgi/4168193‑4168479                                                                                                                                             |                                                                                                                                                    cctcctTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAat                                                                                                                                            >  1:10139/1‑149 (MQ=255)   aacatcacccgaagatgagttttgagatattaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAata                                                                                                                                           >  1:66586‑M1/139‑149 (MQ=255)               agaagCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCCTCACATAATTCG‑AAATATCCCGCAACGCGt                                                                                                                              >  2:309228/1‑149 (MQ=14)                   gCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGGGATa                                                                                                                          >  1:183578/1‑149 (MQ=255)                    cGTACTTTGTAGTGCTCACACAGATTGTCCGAAAGACAGTAACATCCAACGCGTCTATGCGATCCTACTGAGGCTTAAGACAACAACGCCTTTCGCTTTCTATGAATAAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATaa                                                                                                                         <  2:319358/149‑1 (MQ=9)                     gTACTTTGTAGTGCTCACCCAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGATTACGCGTGGGGAGTGAGGCTGAAGAGAATACGGCCGTTCGCTTGCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGGGGGATatg                                                                                                                        >  1:11257/1‑147 (MQ=14)                             aagtgtgcacacaGGTTGTCTGATAGAAAGTGAAAAGCAAGGTGTTTACGCGTTGGGAGTGAGGCTGAAGAGAAGAAGGCCGTTCGCTTTCTATTACTGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTc                                                                                                                <  2:129779/142‑1 (MQ=11)                               gTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt                                                                                                              >  2:72401‑M2/1‑141 (MQ=255)                                                 tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                            >  1:147070/1‑149 (MQ=38)                                                               caagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                              <  1:308417‑M1/40‑1 (MQ=255)                                                               caagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                              >  2:308417‑M1/79‑118 (MQ=255)                                                                                                 agagAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctct                                                                 <  1:8830‑M2/128‑54 (MQ=255)                                                                                                 agagAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctct                                                                 >  2:8830‑M2/1‑75 (MQ=255)                                                                                                         aggctcttCGCTTTCTATTAATGAATG‑CTGACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGc                                    <  2:254744/143‑1 (MQ=0)                                                                                                                                            tACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgctattcacttttcatcagacaatctgtgtgag  <  2:85145‑M2/149‑117 (MQ=255)                                                                                                                                             |                                                                                                                                                    CCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAG‑CTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCT  >  NC_000913_3_vch_pgi/4168193‑4168479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.