| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_pgi | 2393422 | 2393434 | 13 | 20 [0] | [0] 20 | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 0 (0.000) | 20 (1.100) | 16/286 | 0.2 | 100% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 0 (0.000) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
CTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGT > NC_000913_3_vch_pgi/2393290‑2393573 | atagctgttctcacgtaacggcagacctgtacctgcaaagcgggaaaggacagacgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcctgacgaacactttgtcatacagccagCGtt < 2:76102‑M2/4‑1 (MQ=255)atagccgttctcacttaacagcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGtt < 1:216583‑M2/4‑1 (MQ=255) ttaacagcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatggcgtttcagcaacccggcaatacccaggaacggcttgacgaacactttctcatacagccagCGCTGTACCCCCAGGTGc > 2:109655‑M2/132‑149 (MQ=255) ttaacagcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGc > 1:306309‑M2/132‑149 (MQ=255) aacagcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGccc < 1:70089‑M2/20‑1 (MQ=255) acgctaaagcgggaaaggatcgccgggatgttcatcattgagttcagcgtatcgcgtttcagcaaccaggcaatacccaggaacggcgtgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGgc < 1:148213‑M2/35‑1 (MQ=255) tgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtctcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTATACCCCCCAGTGCCCGGCAGACGCCCCGgcgc > 2:249422‑M2/113‑149 (MQ=255) aagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCGCAGCAGACGGCCCGGCGCACTg > 1:323589‑M2/109‑149 (MQ=255) ggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGc < 2:306309‑M2/46‑1 (MQ=255) ccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCa > 2:208107‑M2/93‑149 (MQ=255) ttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACAACCAGGTGCGCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCCccagagca > 2:278059‑M2/85‑147 (MQ=255) tcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAg > 1:210169‑M2/64‑149 (MQ=255) gtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcaaacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTCCCCAGCCACAGGCCggccg > 1:265423‑M2/60‑147 (MQ=255) tttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcataaagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCACGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGc > 1:97955‑M2/59‑149 (MQ=255) acactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTAAGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTaa < 1:208107‑M2/129‑1 (MQ=255) tttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTc > 1:226125‑M2/17‑149 (MQ=255) atacagccagCGTTGTACCTCCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCGGGGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGtaatttctcgggg > 2:273417‑M2/11‑143 (MQ=255) atacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGcc < 2:167313‑M2/103‑1 (MQ=255) atacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGcc > 1:167313‑M2/11‑113 (MQ=255) atacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCACAATCCCGCACACCGCGGCCGCGCCAGAGGGAATTTCCagggg > 2:181640‑M2/11‑148 (MQ=255) | CTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGT > NC_000913_3_vch_pgi/2393290‑2393573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |