New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 781577 = | 48 (0.660) | 29 (0.400) +G |
6/292 | 7.2 | 50.2% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
? | NC_000913 | = 2521129 | 10 (0.140) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
Rejected: Coverage evenness skew score above cutoff. |
TCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCA > NC_000913/2520985‑2521238 | tCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTtctc < 1:437435/149‑1 (MQ=255) aTCCCGTCATCACCCACCACCTACTTTATGTAGTATACGCCGTGTAGCAATTAATTGAGAAGAGTTTGATTAACTCAGCTGGGACAGCACCTCCCTTAAAAGGAGTGGGGAGGCGGTTAGATCCCGTCATCCCACACCACttacaaaca > 2:459618/1‑142 (MQ=16) tCCCGTCATCACCCACCAAGTACTATAGTTAGAATACGAGGTGTAGCAAGAAAATGAGAAGTGCGTGATTAGCTCAGAGTGGAGAGCACCTCCCTTACAAAGAGTGGGTCGCGGGTTCGATCCCGTCATCACCCACCACattagataca > 2:523883/1‑142 (MQ=12) caccaACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCCCCACTATCTCGCCAGCTCAAtttgtgg > 1:1073455/1‑145 (MQ=255) accaACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCCTCATCACCAACCACATTCTCGCGAGCTAAATTTCTTGt > 1:406686/1‑149 (MQ=255) tcCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTACGCTCGAGCGATATTTCTTTTGAACAGGTGACGttaattcc > 1:172780/1‑142 (MQ=17) cgTGTAGCAAGAACTTGAGCCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGt < 1:879782/149‑1 (MQ=255) gtgtAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAAtgt < 1:507832/131‑1 (MQ=255) gtgtAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAAtgt > 2:507832/1‑131 (MQ=255) gtAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACttc > 1:873807/1‑99 (MQ=255) gtAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACttc < 2:873807/100‑2 (MQ=255) gggAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCCCCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTACGCTGGGAGAGCGCCGCCCTTACATGGAggg > 1:405600/1‑149 (MQ=37) gaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTATATGTGTTGTAAAAATGTGAAGTACAGAAGTGTGTTCGTAGCTCCGCTGCGAGCGCGCCACCCGTAAAAGAAGGGGGTCCGCGGTTCGAGCACGtaa > 2:574525/1‑147 (MQ=19) | TCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCA > NC_000913/2520985‑2521238 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |