| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 3270206 | 17 (0.580) | 3 (0.170) +GCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAG |
3/172 | 2.6 | 21.8% | noncoding (3270206/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 3270238 | 19 (0.650) | noncoding (3270238/4641682 nt) | repeat_region | repeat region | |||||
AAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTT > NC_000913_3_vch_tpiA/3270064‑3270339 | aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaa > 1:406427/1‑149 (MQ=39) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg < 1:485894/149‑1 (MQ=38) aCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAGTCAGGTGaa > 1:214606/1‑149 (MQ=37) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaaa < 1:462509/149‑1 (MQ=38) cGGGTTTTTACGTAAACCAGGTGAACCTGACCGATAAGCCGCTTTCTTTTGGGGATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAGAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGAtc > 1:29812/1‑148 (MQ=255) aagcgggTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑c < 2:359776/144‑1 (MQ=255) ccAGGTGAGACGGACCAAGTAGCCGCTTTCTTTTGTGTATGGCGTCGTGATTTGTCATTCATCTTTCTGCCCCTCCAAAAGAGAAAACCCGCCGAAGCGGGTTTTTACGTAATTCAGGGGAAACTGACCGATAAGCCGGGTTCTGT‑CGt < 1:274393/149‑1 (MQ=14) ccAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGt < 1:347717/149‑1 (MQ=255) gTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGATGAAACTGACCGCTCAGCCGGGTTCTGT‑CGTggtc > 1:148924/1‑147 (MQ=255) tGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACa < 1:473147/149‑1 (MQ=255) gCTTTCTTATGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAACGCAAAACCACGCCGCAGCGGGATTTTGAGTACATCGGGTTAGAACGACCGATACGCCTGGTTCTGTCCGTGCA‑AGACAGTAAACTAGGCCAGc > 2:158909/1‑149 (MQ=9) gtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTgcttttggcggggcagaaagatgaatgactgtccacgacgctatactcaaaagaaagcggcttattggtcagtttcccctggttttagt > 1:290727‑M1/1‑60 (MQ=255) cTGCCCCTCCAAAAGCAAAAACCCGTCGAAGCGGGTTGTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACgg < 1:475206/149‑1 (MQ=255) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGTGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCgg > 1:252942/1‑148 (MQ=255) cTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTgcttttggaggggcagaaagatgaatgactgtccacgacactatacccaaaagaaagcggcttatcggtcagtttcacctgttttacgtaaaaacccgcttcggcgggt > 1:98230‑M1/1‑34 (MQ=255) cTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTgcttttggaggggcagaaagatgaatgactgtccacgacactatacccaaaagaaagcggcttatcggtcagtttcacctgttttacgtaaaaacccgcttcggcgggt < 2:98230‑M1/143‑110 (MQ=255) cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGAAAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTCCCCGCGTTCAGTACGCTCCGTACCt > 2:445826/1‑149 (MQ=37) aaaaGCAAACACCCGCCGAAGCGGGTTTTTACGTAAATAAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCtt < 1:78809/149‑1 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:289950/60‑1 (MQ=40) aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttttgggtatagtgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgcttcggcgggtttttgcttttggag > 1:98230‑M2/1‑52 (MQ=255) aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttttgggtatagtgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgcttcggcgggtttttgcttttggag < 2:98230‑M2/143‑92 (MQ=255) gccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTAttt > 2:136247/1‑149 (MQ=255) | AAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGT‑CGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGCCGTACCTTATGAACCCCTATTT > NC_000913_3_vch_tpiA/3270064‑3270339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |