| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_tpiA | 3,815,837 | Δ124 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_tpiA | 3815837 | 3815960 | 124 | 32 [0] | [0] 32 | [rph]–[rph] | [rph],[rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 3815836 | 0 (0.000) | 31 (1.060) | 28/284 | 0.2 | 100% | noncoding (3815836/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3815961 = | 0 (0.000) | noncoding (3815961/4641682 nt) | repeat_region | repeat region | |||||
ATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA > NC_000913_3_vch_tpiA/3815690‑3815984 | aTTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATCCTTTTGCTCGTCGTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtg < 1:482923‑M1/149‑3 (MQ=255) cAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcgatcatc > 2:286894‑M1/1‑129 (MQ=255) tAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgt < 1:94137‑M1/149‑28 (MQ=255) cTGCTTGCTAAGTGGAACTTCAATCAAACGGCGGTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCCTCCGTCGGCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgt < 2:85806‑M1/149‑34 (MQ=255) cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAACAGGAGTCTAAACATCCTCCTT‑AAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggt > 1:119465‑M1/1‑112 (MQ=255) cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTATACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcgg > 1:76096‑M1/1‑113 (MQ=255) gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATATTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcaatacgttcatgtcggtgtctgag > 1:129374‑M1/1‑105 (MQ=255) cgcAACTTCAATAAACTGGCGCTGATATGGTTTCCTGCCTTCGCTCCTCATTTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAATTCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg < 1:175586‑M1/149‑46 (MQ=255) gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTCACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggc > 1:217607‑M1/1‑103 (MQ=255) cAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca < 1:17718‑M1/149‑48 (MQ=255) aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt < 2:161265‑M1/149‑55 (MQ=255) aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTCCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcccccgtcttcctccatcactaccctcctgtcggtccctgcgacagactcttc > 2:147726‑M1/1‑94 (MQ=255) aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac > 2:195797‑M1/1‑91 (MQ=255) cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcg > 1:369951‑M1/1‑66 (MQ=255) ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcgtcaccgtt > 1:166845‑M1/1‑61 (MQ=255) cttcatATTATTTTTCTAGAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttccgtcattactacgttcatgtctgtctctgcggcagagtcttcaacgtattccagagcgcaaaccgcttcgccgttca < 2:12169‑M1/147‑91 (MQ=255) ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactaaaatacgctggtggtctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac > 1:504136‑M1/1‑58 (MQ=255) tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaatt > 1:465940‑M1/1‑54 (MQ=255) aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttccccgttcacaattccga > 2:285993‑M1/1‑50 (MQ=255) cTTTTCCACACACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac < 1:132360‑M1/149‑101 (MQ=255) ttatacaGACAAAAAAAAGGCGACTCATCAGTCGTTGTAAAAATCAtgcgcccgtcttcgttcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacaga > 2:508407‑M1/4‑46 (MQ=255) aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcccaattccgacagaaactgcgg > 1:173905‑M1/1‑38 (MQ=255) aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac < 1:410915‑M1/96‑59 (MQ=255) aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac > 2:410915‑M1/1‑38 (MQ=255) gACTCATCAGTCGCCTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgacgttcccaattccgacagaaactgcggctaccatcccatt > 1:33410‑M1/1‑25 (MQ=255) cacccgtctccTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccctttctctaaccgcttcgccgttcacaattccgacagaaactgcggctaccttccctttcatc < 2:236765‑M1/144‑129 (MQ=255) tcggtttaaaaaTCAtgcgcccgtcttcggtcatcacttcgtttatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccggcagaaactgcggctaccatccctttcatcggattg < 2:476712‑M1/144‑135 (MQ=255) ccTTAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggtt > 1:279913‑M1/1‑12 (MQ=255) ttAAAAATCAtacgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagaggcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcccattcatcggattggtttt > 2:357145‑M1/1‑10 (MQ=255) tAAAAATCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttc < 2:59958‑M1/149‑141 (MQ=255) aTCAtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagctt < 2:217607‑M1/149‑146 (MQ=255) atgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgcc > 1:287735‑M1/1‑1 (MQ=255) | ATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA > NC_000913_3_vch_tpiA/3815690‑3815984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |