| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1207790 = | 36 (1.270) | 6 (0.240) | 5/252 | 2.8 | 17.4% | noncoding (11571/15193 nt) | cryptic prophage e14 | cryptic prophage e14 |
| ? | NC_000913_3_vch_tpiA | 1209619 = | 25 (0.990) | noncoding (13400/15193 nt) | cryptic prophage e14 | cryptic prophage e14 | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAA > NC_000913_3_vch_tpiA/1207644‑1207923 | catcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg > 2:130935‑M1/147‑149 (MQ=255)catcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgagtacatagccaataagcatgttaaatcctcctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg > 2:188556‑M1/147‑149 (MQ=255) ctgcacggttcagcccattacgtggtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt > 1:63478‑M1/143‑149 (MQ=255) tgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:455767‑M1/8‑1 (MQ=255) tgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:324886‑M1/142‑149 (MQ=255) ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAATGATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 1:142111‑M1/149‑1 (MQ=255) gcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:3850‑M1/141‑149 (MQ=255) ctggaGGCATCCGGTTCCAGCCTGGAGAAGGGGGGGCACGACCAGTTACTTACCGCACTTCGCACGCTGCTGTTTTGCCGCAAGATTCAGTTTGGCGATATCAAATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG < 1:444265‑M1/148‑1 (MQ=255) tggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGA > 2:412149‑M1/1‑149 (MQ=255) catcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa > 2:300285‑M1/133‑149 (MQ=255) cATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa > 2:282926/1‑149 (MQ=255) cATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa > 2:282948/1‑149 (MQ=255) cATCCGGGGCCAGGCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGAACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCATATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa < 2:469643/149‑1 (MQ=255) aTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTTGGGAGAAGGAg > 1:315880/1‑149 (MQ=255) tCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGAGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACCACTCTCGAAAACCTTGGTGTGGGAGAAGGccc > 2:288833‑M1/1‑146 (MQ=255) gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACt < 2:405468/149‑1 (MQ=255) cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:465082/1‑149 (MQ=255) tggtagatcggtgttctggtcatttgttgatgcgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttatccagttttaagtacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 2:105576‑M1/29‑1 (MQ=255) ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg < 1:267062/149‑1 (MQ=255) tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:282926/149‑1 (MQ=255) tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:282948/149‑1 (MQ=255) gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc > 2:52912/1‑149 (MQ=255) gggCGGCACGACCAGTTACTCACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:296037/149‑1 (MQ=255) gcgtcACGAACAGTCACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 2:491617/149‑1 (MQ=255) gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:52912/149‑1 (MQ=255) ggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 2:6535/149‑1 (MQ=255) gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 2:478126‑M1/5‑1 (MQ=255) gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt > 1:478126‑M1/103‑107 (MQ=255) gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg < 2:465082/149‑1 (MQ=255) aCCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 2:231171‑M1/1‑115 (MQ=255) tttgttgatacgcgtacatagccaatcatcatgttaaatccccctggtaaaagcaggaatgataccatttacttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAttagtaa < 2:284039‑M1/51‑4 (MQ=255) ccAGTTACTTACCCCCCTTCGCCCGCAGCTGTTAAGCCGGAAGAATCCGTTTGGCGATATCAAATCGGCTGGCACTGTGCAAACGGCTGTCGAAAACCTTGGTTTGGAAGAAGGAGCCATACTCAATGCAGCAACGGCTACATTAGGAc > 1:410548/1‑149 (MQ=21) ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg > 2:423386‑M1/1‑110 (MQ=255) ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg < 1:423386‑M1/135‑26 (MQ=255) ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:267835/1‑149 (MQ=255) cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTCCCAACTCGCATGGACCTGTGCACAAAGATCTCAAAAACCTTGGCCAGGGCGAATCAGCAAAACGCAACCCAGCAACGGCTACATTAGGACGCACCgg > 2:44217/1‑149 (MQ=16) acCGCACTTCGGGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATAAAATCGGATGGAACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAAGAGTTGCTAAACACGGTGCATCTACGGCTACATTAGTACTCACCGGttt < 2:227378/149‑1 (MQ=17) cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:82699/1‑149 (MQ=255) cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAAACTCGGGTTGGGGGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGAACCGGTTTCa > 1:244241/1‑149 (MQ=25) gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt > 1:8176‑M1/86‑149 (MQ=255) gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggct > 2:214342‑M1/1‑90 (MQ=255) ctgctgTTAAGGCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:484467/149‑1 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGGAGCAAAGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:371249/1‑149 (MQ=255) tgctgTTAAGGCGCAAGAATCCTTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt < 2:69180/149‑1 (MQ=255) tgatgTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGAATGGCAGTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCGGCAACGGCTACATTAGGACGCACCGGTTTGGTAGCTCTGCCGGtt > 1:228715/4‑149 (MQ=25) gctgTTGTGCAGAAAAAATACGTTGGGCGATATCAAATCGGATGGCACTGTGAAAACGGCTCTCGAAAACCTCGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa < 2:244752/149‑1 (MQ=255) gctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa < 2:267835/149‑1 (MQ=255) gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga > 1:481204‑M1/1‑84 (MQ=255) tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa < 1:214342‑M1/149‑68 (MQ=255) gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt > 2:443684‑M1/67‑149 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCCATACCGGTTATGATtg < 2:284926‑M1/84‑1 (MQ=255) ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg < 2:42357/149‑1 (MQ=255) ccagagTCCGTTGGGGTATATCAAAGCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa < 2:395093/147‑1 (MQ=38) aaTCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTGGGTGTGGGAGAGGGAGCAAAACTCAATGCAGCAACGGCTACATTAAGACGCACCGGTTTCCTAGCTATACCGGCTAAGATTGGTGCCATTgg > 2:128931/1‑148 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:113793/96‑1 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa > 2:113793/1‑96 (MQ=255) tCATATCGGATGGCACTGTGTAAACGGCTCTCGATAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCCACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGATGGTATTCACCAATCAGTCATCAtt < 2:410548/149‑1 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGATATGATTGCAGGTATTTGGTCATCAGCAATCAtt > 1:486998/1‑149 (MQ=38) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccg < 1:480986‑M1/149‑104 (MQ=255) ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtatcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgga > 2:127208‑M1/1‑44 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc < 2:82699/149‑1 (MQ=255) cGGCCCTAGAAAACCTTTGTTTGGGAGAAGGAGCAAAACTCAATGAACCAGCGTTTACATTAGGACGCACCGGTTGCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa < 1:67926/149‑1 (MQ=255) | CAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAA > NC_000913_3_vch_tpiA/1207644‑1207923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |