New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 2347214	44 (0.930)	5 (0.110)	5/272	6.0	8.9%	noncoding (55/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
	?	NC_000913_3_vch_tpiA	4027525 =	61 (1.350)					noncoding (204/281 nt)	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGACGGCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCA  >  NC_000913_3_vch_tpiA/2347069‑2347359                                                                                                                                                  |                                                                                                                                                  tGACGGCGATGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAg                                                                                                                                                <  1:574297/149‑1 (MQ=255)     ggCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATGCGAcgc                                                                                                                                            >  2:259343/1‑149 (MQ=255)     ggCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGAcgc                                                                                                                                            >  1:685044/1‑149 (MQ=255)        gcTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCACGGTTTGTAGGCCTGATAAGACGCGcc                                                                                                                                         >  2:447081/1‑149 (MQ=255)          tGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTACGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAg                                                                                                                                       >  1:13598/1‑149 (MQ=255)                   acaAGACTATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCCTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATc                                                                                                                              <  1:783693/149‑1 (MQ=255)                              gggTGCCGTCAATCCCGGACGATGGCTGCGAAAGCGGAGCAGCTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGt                                                                                                                   <  2:504782/148‑1 (MQ=255)                                    cGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGa                                                                                                             <  1:276383/149‑1 (MQ=255)                                            cAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGt                                                                                                     >  2:565479/1‑149 (MQ=255)                                               gACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGaa                                                                                                  <  1:271441/149‑1 (MQ=255)                                               gACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGaa                                                                                                  <  1:440060/149‑1 (MQ=255)                                                aCGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAAc                                                                                                 <  1:315693/149‑1 (MQ=255)                                                  gATGGCGGGGACAGCGGTGGAGGTTGGATCTGCTATTGAGGTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATACGACGCGCCAGCGTCGCATCCGGCTCCGGGTGCCGGATGCAGCGTGATCGc                                                                                               <  2:30573/149‑1 (MQ=18)                                                        ggggAAAGCGGCGCATGTAAGATCTGATAGTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATc                                                                                         <  2:439540/146‑1 (MQ=255)                                                            aaaGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGc                                                                                     <  1:317228/149‑1 (MQ=255)                                                            aaaGCGGCGCATGTAAGATCTGATATGGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGTGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGc                                                                                     <  1:252917/149‑1 (MQ=255)                                                                  gcgcATGTAAGATCTGATATTGCGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGGTTGGCGGCCTGCGAAGACTCCCCACCGTCGCACCAGGCCCCGGGTGCCGCATCCACCCTGAACCCCTTCTCCGccccccgc                                                                               >  2:1921/1‑144 (MQ=19)                                                                     cATGGAAGATCTGATATTGAGATGCCGGATGCGGCGTATACGGTTTATCCTGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTc                                                                            <  1:154897/149‑1 (MQ=37)                                                                       tGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCGTGTCGGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCgg                                                                          >  1:823168/1‑149 (MQ=255)                                                                         tAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGAt                                                                        <  2:575090/149‑1 (MQ=255)                                                                             accTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGt                                                                    <  1:469254/147‑1 (MQ=255)                                                                               cTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCGCGGATTTGTAg                                                                  >  2:770817/1‑149 (MQ=255)                                                                                tGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCCCGGCGTTGTAgg                                                                 >  1:2341/1‑149 (MQ=255)                                                                                  acatTGAGATGCCGGATGCGGCGTAAACGCCCCATCCGTCATACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAATAGACGCCTGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGcc                                                               <  1:405685/147‑1 (MQ=25)                                                                                   tatTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCt                                                              <  1:561394/149‑1 (MQ=255)                                                                                   tatTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAAGCCTGCACATACTCGCAAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCt                                                              >  1:820416/1‑149 (MQ=37)                                                                                          aTGCCGGAGGCGGCGTAAACGCCTTAGCGGGCCTACGGCTCGGTTTGTAGGGCTGATAAGACGGGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGa                                                       <  2:135476/149‑1 (MQ=38)                                                                                                 ataaggcgTTTACGCCGCATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGAt                                                           <  2:436778/134‑1 (MQ=37)                                                                                                  tGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAg                                               <  1:19510/149‑1 (MQ=255)                                                                                                     ggcgTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGt                                            >  1:831973/1‑149 (MQ=255)                                                                                                       cgTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGACAGCCTTCTCCGGCCTCCGGCCGGGATTTGTAGGCCTGGTAAGACGCCCCacgctcc                                          >  2:236661/1‑143 (MQ=25)                                                                                                                 ttATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGcac                                >  2:114540/1‑149 (MQ=255)                                                                                                                 ttATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGcac                                >  1:761998/1‑149 (MQ=255)                                                                                                                         ccTACGGCTCGGTTTGTAGGCCTGATAAGACTCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGGCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATgcg                        <  1:515264/149‑1 (MQ=255)                                                                                                                                cTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCCAGGATGCGGCGTaaa                 >  1:686820/1‑149 (MQ=255)                                                                                                                                cTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAGCAGGCCCCGGGTGCCGGATGGAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTaaa                 <  2:769441/149‑1 (MQ=255)                                                                                                                                        gTAGGCCTGAAAAGACGCGCCAGCTCCGCACCAGTCTCCGGGGGCCGAATGCAGCGTGAACGCCTTATCCGGCCAACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCACCGTCGCACCAGACACACGATGCCGCGTAAAATGCCTTa         <  2:143204/149‑1 (MQ=21)                                                                                                                                          aGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACTCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATc       <  1:447081/149‑1 (MQ=255)                                                                                                                                            gCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg     >  1:488885/1‑149 (MQ=255)                                                                                                                                              cTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATACGACGCGCCAGCGTCGCAGCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGc   >  2:591349/1‑149 (MQ=255)                                                                                                                                               tGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGcc            >  2:760763/1‑139 (MQ=255)                                                                                                                                               tGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGcc            <  1:760763/139‑1 (MQ=255)                                                                                                                                               tGATAAGACCGGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa  <  1:235695/149‑1 (MQ=255)                                                                                                                                                  tAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAgg                             >  2:257853/1‑119 (MQ=255)                                                                                                                                                  tAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAgg                             <  1:257853/119‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  TGACGGCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCA  >  NC_000913_3_vch_tpiA/2347069‑2347359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.