New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_tpiA = 94491134 (1.080)4 (0.130) 4/272 4.0 10.5% noncoding (944911/4641682 nt) repeat_region repeat region
?NC_000913_3_vch_tpiA = 944917 36 (1.210)noncoding (944917/4641682 nt) repeat_region repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTAAAAGGTTATCAGCCTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGCC  >  NC_000913_3_vch_tpiA/944767‑945054
                                                                                                                                                |                                                                                                                                               
cgtAAAAGGTTATCAGCCTGCGGTTCCGTTACTTTTTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTc                                                                                                                                             <  2:121828/147‑1 (MQ=255)
  tAAAAGGTTATCAGCGTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCgg                                                                                                                                           >  2:391425/1‑149 (MQ=255)
            tCAGCCTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCACGCTAATCATAACAACCGGGGTTTCGGCCCCGGGtct                                                                                                                                 >  2:262614/1‑149 (MQ=255)
                      gTTCCGCTACTTTCTGTATCATTCATTCTCCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTc                                                                                                                       <  1:474198/149‑1 (MQ=255)
                                tttCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCCTCGTTa                                                                                                             >  2:243391/1‑149 (MQ=255)
                                tttCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGACGTATTCTATGATTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTa                                                                                                             >  1:172529/1‑149 (MQ=255)
                                  tctcTATCATTCATTCTCCTTATTACAGGGGAAGTAATCGGTCGGTGTTTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCTTTAAc                                                                                                           >  2:547042/1‑149 (MQ=255)
                                  tCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAAc                                                                                                           >  2:151218/1‑149 (MQ=255)
                                      tagcattcattCTTCTTCTGGCAGGGGCATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCTAGCTAATCATAACATCCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACgtgt                                                                                                       <  1:2892/146‑1 (MQ=255)
                                        gcattcattCTGCGTTTTGTAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCa                                                                                                     <  2:85401/148‑1 (MQ=255)
                                           ttcattcTGCTTCTGGCAGGGGAATTAATCGGTCGCGTCGTATTCGATGGTTTGCATATGACCGTGGGGATGGCCGTTGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATaa                                                                                                  <  1:68279/149‑1 (MQ=255)
                                              attcTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAAAAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAAccg                                                                                               >  2:460639/1‑147 (MQ=255)
                                                    cTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGATCGTGGGTATGGCCGTCGTAAGCTAATCTTAACATCCTGGTTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGtcatc                                                                                         <  1:243391/149‑1 (MQ=255)
                                                     ttCTGGCAGGGGAATTAATCGGTCGCGGCGGATTGGAGGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATTACTGGttctca                                                                                        >  2:534551/1‑144 (MQ=255)
                                                     ttCTGGCAGGGGAAGTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGGTGGCCGTCGCGAGCTAATCATACCAACCAGGGCTTCCACCCCGCATCGCTGTTATTTATTCTTCGTTACCGTTCCATAACTAGtcatcc                                                                                        >  2:29899/1‑148 (MQ=255)
                                                                          gTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAAtgt                                                                   >  2:307649/1‑149 (MQ=255)
                                                                           tCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAAtgtg                                                                  >  2:213072/1‑149 (MQ=255)
                                                                           tCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAAtgtg                                                                  >  2:213084/1‑149 (MQ=255)
                                                                           tCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTGCTCTTTTATTTCTGCTTCGTTAACGTGACATAACTGGTCATCAAATTACGATAATCAGGAAtgtg                                                                  <  1:519563/149‑1 (MQ=255)
                                                                             gcggcgTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGt                                                                <  2:228214/149‑1 (MQ=255)
                                                                                gcgTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTag                                                             <  1:213084/149‑1 (MQ=255)
                                                                                gcgTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTag                                                             <  1:213072/149‑1 (MQ=255)
                                                                                      tCTATGATTAGCATATGACCGTGGGGATGGCCGTGGCAAGCTAATCATAACAAACGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCTAAACTGGTCATCAAATTACGATAAACAGGAATGTGGTTATATaaca                                                       >  2:147294/1‑149 (MQ=255)
                                                                                            gTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCg                                                 >  1:181071/1‑149 (MQ=255)
                                                                                             tttGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGc                                                <  1:34140/149‑1 (MQ=255)
                                                                                                  atatGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTCTTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGcacgcc                                           >  2:234129/1‑144 (MQ=255)
                                                                                                  atatGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCAACCCCGATACACTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTc                                           >  1:707/1‑149 (MQ=255)
                                                                                                         cGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAat                                    >  1:159809/1‑149 (MQ=255)
                                                                                                               gATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTTGGCTCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCAtt                              <  1:272238/149‑1 (MQ=255)
                                                                                                                   gCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACTAGAATTAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGc                          <  1:521609/149‑1 (MQ=255)
                                                                                                                               tAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTAATCAAATTACGATAATCAGGAATGTGGTTAGAGAAAAACGTCGCCAGTCCTTAAATATCATAACACCAGTGGCGAtac              >  1:165563/1‑147 (MQ=255)
                                                                                                                                   cgtAACAACCGGGGTTCCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGCTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGTCAGTCGCGATGCAGCt          <  2:550978/147‑1 (MQ=255)
                                                                                                                                       acaacCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGca      <  1:151218/149‑1 (MQ=255)
                                                                                                                                           ccGGGGTTTCGGGCCCGGTTCTCTTTTGTTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGTAATGTGGTTAGATAACAACGTCGCTAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGcacgcc  <  1:184131/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                               
GCTAAAAGGTTATCAGCCTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGCC  >  NC_000913_3_vch_tpiA/944767‑945054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.