New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1667396 =	34 (1.080)	4 (0.130)	4/278	4.1	10.7%	noncoding (1667396/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1667427 =	34 (1.110)					noncoding (1667427/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGC  >  NC_000913_3_vch_tpiA/1667248‑1667543                                                                                                                                                     |                                                                                                                                                    tataAACCATGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGTGCAAATTTTGTTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTa                                                                                                                                                     <  1:95175/149‑1 (MQ=255)   taAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGACCCAAATTGAGAAAACACAAATTTTGATAGAACAGTTAAAAAATGTTAACCCTGCAACAAACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTAcc                                                                                                                                                   >  1:216124/1‑149 (MQ=255)      acatgtaaaaTAATGAACTTCCAAACTCTAATTTATCCTTTCCTGTCCCAAATTGAGATAGCGCAAATTTTAGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGt                                                                                                                                                <  2:128569/143‑1 (MQ=255)         aGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCa                                                                                                                                             <  1:326322/149‑1 (MQ=255)           gAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAgc                                                                                                                                           >  2:530307/1‑149 (MQ=255)           gAAAATAACTAACCTTGAAAGTCTAAGTTATGCTCTCCCAGCCCAAATCTCGATAGCGCAAAGTTTGGTAGACCAGAAAAAATGCGTTAGCCCTGCAACAGACGAATCAACAAATAACCGTTATACATCGCGTCTTTTACCAGGGCAgc                                                                                                                                           <  2:88526/149‑1 (MQ=255)                        cTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCt                                                                                                                                       <  1:321030/140‑1 (MQ=255)                        cTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCt                                                                                                                                       >  2:321030/1‑140 (MQ=255)                            aaaGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCt                                                                                                                          <  2:96597/149‑1 (MQ=255)                             aaGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTg                                                                                                                         <  1:77219/149‑1 (MQ=255)                                tcaaaGTTATGCTTTCCTAGCCCAAATTGAAATAGCGCAGAGGTTGGTAGAACAGTTAAAAAACGTTAACCCTGCAACAGACGAATCAACAAAAAACCGTTATACATCGCGTCTTTTACCAATGCAGAGCCTGCCATCGTGCCCTGGtt                                                                                                                      >  2:543155/4‑149 (MQ=255)                                tCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACTGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGtt                                                                                                                      <  1:143240/149‑1 (MQ=255)                                           cgttCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAg                                                                                                           <  1:165483/147‑1 (MQ=255)                                           cTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAg                                                                                                           <  1:479487/149‑1 (MQ=255)                                           cTTTCCTGGCCCAAATTGAGATAGCGCAAATCTTAATATAACAGTGAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGATTCGTTATACATCGTGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAg                                                                                                           <  1:12962/149‑1 (MQ=255)                                                    cccAAATTTAAATAGCGCAAATTTTGGTAGAATACTTATAACGCTTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCaa                                                                                                  <  1:428791/149‑1 (MQ=255)                                                     gcagatagagaTAGCGCAAATGTTGGTAGAAGAGTTAAAAAATGTTAACCCTGCAATAGACGAATTAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCATCTCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTGAAc                                                                                                 <  2:59656/142‑1 (MQ=255)                                                                    gcAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAAAAAAAAAAAGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCGCTGGTAAGAAAACTGAGTACTCTCAAGGCTGATGTGCTGAcg                                                                                  >  1:47118/1‑148 (MQ=255)                                                                          tttGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGc                                                                            <  1:530307/149‑1 (MQ=255)                                                                                 gAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGAGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAgg                                                                     >  1:484444/1‑149 (MQ=255)                                                                                       ttAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCctgc                                                               >  1:342862/1‑149 (MQ=255)                                                                                       ttAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCctgc                                                               >  2:346608/1‑149 (MQ=255)                                                                                           aaaaTGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGAc                                                           >  1:361596/1‑149 (MQ=255)                                                                                               tGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGAt                                                       <  1:425320/149‑1 (MQ=255)                                                                                                  tAACCCTGCAAAAGTGCAATCAACAAAGCACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGTTGACGGATGCt                                                    <  1:346386/149‑1 (MQ=255)                                                                                                   aaCCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTACCATCGTGCCCTGATTAGAAAACTGAATACTCTCAACGCTGATCTGCTGACTATACGCAGGAAGGGCCAGCTGACGGATGCTg                                                   >  1:232700/1‑149 (MQ=255)                                                                                                          tgaCAGACGAATAAACCAAGAACCGTTATACATCGCGTCTTTTACCAGGGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGTGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGTGCCTGCTGACGGATGCTGTCTgaga                                            <  2:200838/147‑1 (MQ=255)                                                                                                           aaCAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGAt                                           >  1:538447/1‑149 (MQ=255)                                                                                                              aGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGAAGAGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGAATAGACACAGGAAGGGCCTACTGACGGATATTGTCTGAGAGGAc                                        >  1:348533/1‑149 (MQ=255)                                                                                                                  gAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCggg                                    >  1:321361/1‑149 (MQ=255)                                                                                                                  gAATCAACAAAGAACCGTTATACATCGCATCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCggg                                    >  2:534889/1‑149 (MQ=255)                                                                                                                        acaaAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTTAACGCTGATGTGGTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAgg                              <  1:100645/149‑1 (MQ=255)                                                                                                                                       aCATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTCACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTa               >  1:24184/1‑149 (MQ=255)                                                                                                                                                    tACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTATAAAACTGAGTCCTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGc  >  1:188171/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGC  >  NC_000913_3_vch_tpiA/1667248‑1667543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.