New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2041152 =	NA (NA)	4 (0.130)	4/272	4.0	NA	noncoding (1/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_vch_tpiA	2041182 =	NA (NA)					noncoding (31/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCT  >  NC_000913_3_vch_tpiA/2041009‑2041299                                                                                                                                                |                                                                                                                                                     cGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAACAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGa                                                                                                                                                 >  1:263754/1‑149 (MQ=255)     cATCTACCCTGGGCTGGCTGTACTGCTTTTAGCCTTATGGTATAAGAAGTTGCGTTCCCTTTTTAAGCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtgtg                                                                                                                                             <  2:225671/149‑1 (MQ=255)           cGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGa                                                                                                                                       >  1:3978/1‑149 (MQ=255)                            tGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATa                                                                                                                      >  1:248116/1‑149 (MQ=255)                            tGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCAGATGGATTGCGAGCGCCCCATCCGGtata                                                                                                                      >  2:553789/1‑149 (MQ=255)                             gCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                                                                     >  1:496413/1‑149 (MQ=255)                               ttttAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGTTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCCTTATCCGTGCCGGTAGTGGCGCTAGCGCCCTATCCGGCATacac                                                                                                                   >  1:516636/1‑149 (MQ=255)                                 ttAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCTTATTGCCGACAAAGAACGCGTTATCGCTGCCGGATTTGGCGCGAGCGCCCTATCCGGCATACACAg                                                                                                                 <  2:524409/149‑1 (MQ=255)                                      cTTACGGTATAAGAAGTTGCGTTCCCTGTTTAACCGGTTACGCAATCAGGTTCACAAAAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGc                                                                                                            >  1:524509/1‑149 (MQ=255)                                             tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCAGGCATACACAGATCGCATCAGGt                                                                                                     >  1:66028/1‑149 (MQ=255)                                                aagaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTAt                                                                                                  <  2:307739/149‑1 (MQ=255)                                                          gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                        >  1:249300/1‑149 (MQ=255)                                                               cTTTATAATCTGCTATGCAATCAGGTTCACATCAAATTATCTGTATAACTTCATATTGCCGACATAGTACGCGTTACCCCGGCCGAATGTGGCTCCACCGTCATTTCCGGCACCCACACCTCGCATCAGGTTATGTTTCGTTTGtcatc                                                                                   <  2:172858/149‑1 (MQ=255)                                                                  tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAc                                                                                <  2:249300/149‑1 (MQ=255)                                                                            tACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCAc                                                                      <  1:553789/149‑1 (MQ=255)                                                                                                 aaTTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGACACGAGCGCCCTATCCGGCATACACAGATAGCATCAGGTTAAGTTTCGTTAGTCATCCACCTCAAAT‑ACCAACCATCATTTCTTTTACTTc                                                >  2:380322/1‑149 (MQ=255)                                                                                                         gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCTCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAagat                                        <  1:97008/149‑1 (MQ=255)                                                                                                         gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAagat                                        <  1:97732/149‑1 (MQ=255)                                                                                                             aaCTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGTGCTATATGACTTATTTATCGGTATCTGCATATTATGGTTCGTTTGTGCTGAGCTGTAAATCACGAC‑AATACTTTATTTTATTTCAATAagatatat                                    >  1:545023/1‑149 (MQ=255)                                                                                                               cTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGTCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AACAATTTATTTAATTTGAATAagaaaattag                                  >  2:244881/1‑142 (MQ=255)                                                                                                                ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAg                                 >  1:86627/1‑149 (MQ=255)                                                                                                                ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGACATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAg                                 >  1:512724/1‑149 (MQ=255)                                                                                                                  cATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTa                               <  2:248116/149‑1 (MQ=255)                                                                                                                    tatTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAACTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGa                             >  1:535943/1‑149 (MQ=255)                                                                                                                                  tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATCATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt               >  2:489120/1‑149 (MQ=255)                                                                                                                                   aCGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATg              >  2:299522/1‑149 (MQ=255)                                                                                                                                        ttATCCCTGCCGGATGTGGCGCCACCGCCATATCCGGCATACACCGATCGCATCATGTTATGTTTCGTTTGTCATCAATCTCAAATTACCAA‑AATAATTTATTTTATTTCAATAAGATAGAGAAGTAGAACTGAGAAAGCCATGCtctc         <  1:77537/149‑1 (MQ=255)                                                                                                                                           tCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGtt      <  1:299522/149‑1 (MQ=255)                                                                                                                                             ccTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTc    <  2:524509/149‑1 (MQ=255)                                                                                                                                              cTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTcc   >  2:272902/1‑149 (MQ=255)                                                                                                                                               tGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAAGTTATGTTTCGTTTGTCATCAACCTCAAACCACAAA‑CATAATTTATTTTATTTCAATCAGATAGTTAAGTAGAATTGAGGAAGTCATTCTCTCGTTTCCt  <  2:187114/149‑1 (MQ=255)                                                                                                                                               tGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCAACAAGTAATGAATCATTTATCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCt  >  1:61182/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     CGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCT  >  NC_000913_3_vch_tpiA/2041009‑2041299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.