| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 4434593 = | 31 (0.980) | 5 (0.170) | 5/272 | 3.6 | 15.1% | noncoding (68/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_vch_tpiA | 4434620 = | 27 (0.900) | noncoding (95/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAA > NC_000913_3_vch_tpiA/4434449‑4434741 | gTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGAGATGAACGTACGACATAACTGCCGGATGCGATGAGCTTATCTGGTCTACGTTGCATGGCTTGTAGGGCGGATAAGATGCGCCAgcatcgcat > 1:321788/1‑149 (MQ=255) tgcACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGcc > 1:400616/1‑149 (MQ=255) gCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGAGGAACGTGCGACATAACTGACAGATGCGCTGAGCTTATCTGGTCTACGCTGCATGGCTGGTAGGGCGCATACCATGCGCCAGCATCACATCCGccgaatact > 2:512957/1‑142 (MQ=255) aCTGAATTTAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGCTGAACGTGCGGCATAACTGCCGGATGCGCTGATCTTATCTGGTCTACGTTGCTTGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCg < 1:451547/149‑1 (MQ=255) tGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATTAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCCATAATTGCCGGa > 1:204002/1‑149 (MQ=255) tGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTTCCGGATGCGATGAGCTTATCTGGTCTACGGTGGATGGCTTGTCGGGCGGATAATATGCGCCAGCATCTCATCCGCCAATCAATCCCGGa > 2:421727/1‑149 (MQ=255) tGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGTCTTGTAGGGCGTATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCgg < 1:354344/149‑1 (MQ=255) tgTTGAATTTGCCCGGGGTGTTGGCTGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGtt < 2:239071/148‑1 (MQ=255) aGTTGAATTTGCCCGAGGTGTGGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGtt < 2:552758/149‑1 (MQ=255) ttGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGACCGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTtga > 1:239071/1‑149 (MQ=255) ttGAATTTGCCCGAGGTCTTGGCGCTGCGGGATGAACGTGCGGCATAACTGCCCGATGCGCTGAGCTTATCTGGTCTACGGTGCCTGGCTTGTAGGCCGGATAAGATACGCCAGCATCGCATCCGCCCATAAATGCCGGACGCGGttca > 2:145824/1‑147 (MQ=255) tttGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCCTAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGCATGAGGTTGATGAtt > 1:536566/1‑149 (MQ=255) ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCTGATGCGCTGAGCTAATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGCTTCGGTTGCTGATGTATAg > 1:19491/1‑149 (MQ=255) cggggTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAgg < 2:11881/146‑1 (MQ=255) cGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCCGTGCATAACTAGTCTCCGGTGCATGGCCTGTAGTCATCAAATCGCGCACCTGCATCGCGGCCACCAATAACTGCCTGATGCTGTTTATGATTTATAgg > 2:392707/1‑149 (MQ=255) cGGTTCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAaagaa < 1:509632/149‑1 (MQ=255) cGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGGTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCGGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAaagaa < 1:394135/149‑1 (MQ=255) cGGTGCGGGAGGAACGTGCGGCACAACTGCCGGATGCGCTGAGCTTATCGTGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGCTTGATTATTTATAGGCCGAAAaagaa < 2:173519/149‑1 (MQ=255) gCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAAGGCGGATAAAATTCACCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATc > 1:298069/1‑149 (MQ=255) tGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGa < 2:400616/149‑1 (MQ=255) attcgcTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGAGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGTATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATc < 2:104210/146‑1 (MQ=255) tGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTttactt > 2:439539/1‑121 (MQ=255) tGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTttactt < 1:439539/121‑1 (MQ=255) cTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGAGTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCCCAAACCCGataaac > 2:374138/1‑146 (MQ=255) gTGCATGGCTTGGAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAATAAGTGTTTTATTTACTCAAATCCACCGGATAAATCGCAAACCCGATATCATCGGTCGCGa < 1:9659/149‑1 (MQ=255) cATGGCTTGTAGGGCGGAGAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACtt < 2:219014/149‑1 (MQ=255) ttGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGCTGATTTATAGGCCGaaaaa < 2:480656/79‑1 (MQ=255) ttGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATCTATAGGCCGaaaaa > 1:480656/1‑79 (MQ=255) gCGGATAAGATGCGCCAGCATCGCACCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCTAAAAAGAAGTGTTTTACTTACTCAACTCCACCTGATAAATCGTAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATa < 1:499765/149‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTg > 1:12269/1‑149 (MQ=255) gcgcCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCTGTCGCGACTTTATTCATCGGAACCTGCCATTtcc > 1:121963/1‑148 (MQ=255) tcaaccgcatcCGGCATTTATTGGCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTta > 2:377201/6‑149 (MQ=255) cgcctcCGCCAATAAATGCCGGATGGGGTTGATGATTTATAGGCCGAAAAAGTAGTGTTTTACTTACTTAAATCCACCTGTTAAATTGTAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATaaa < 1:544446/149‑1 (MQ=255) | GTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAA > NC_000913_3_vch_tpiA/4434449‑4434741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |