| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 1097463 | 10 (0.310) | 5 (0.160) | 5/266 | 3.6 | 35.2% | noncoding (1097463/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 1097467 | 9 (0.300) | noncoding (1097467/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC > NC_000913_3_vch_tpiA/1097317‑1097602 | cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTg > 1:307920/1‑149 (MQ=32) cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTAATTTCGTTCGGGCTATTCTTTAAATATTGCGGTGAGGGGGGGATTGACTCGCTTCGCTCACCCTTCGGGCAGCCCGCTTACTGCGTTTACGGGCTGTCCAACTTGCGTTCGc > 2:571902/1‑149 (MQ=11) ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAAGAGGGGATTGACTGGCTTCGCTCGCTCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGACTGTCGcc > 1:511653/1‑149 (MQ=11) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCgg > 2:478001/1‑149 (MQ=31) aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCg < 2:196492/149‑1 (MQ=31) tGCGTTCACGGTCTGTCCAACTGGCTGACGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATAAGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTCCTTTAAATATGGCGTTGAGGGGCGGGTTCGaa > 2:227155/1‑149 (MQ=11) gTTCACGGTCTGTCTAACCGGCCTGCGTCAGGTGTCGAACCCCGGTCGGGTCTTCTTATCTTTCCGGTTTGTGCATTATACGAAAAAAAAGCCCGTATTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:227155/149‑1 (MQ=11) tGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:489993/149‑1 (MQ=255) tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCACAACACCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGATTCGAACCCCCGATACGTTGc > 1:428575/1‑149 (MQ=255) cTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:307964/132‑1 (MQ=35) cTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 2:307964/1‑132 (MQ=35) | CATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC > NC_000913_3_vch_tpiA/1097317‑1097602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |