| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_tpiA | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_tpiA | 257908 | 258683 | 776 | 38 [0] | [0] 38 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 257907 | 0 (0.000) | 38 (1.250) | 32/266 | 0.1 | 100% | noncoding (257907/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 258684 = | 0 (0.000) | noncoding (258684/4641682 nt) | repeat_region | repeat region | |||||
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT > NC_000913_3_vch_tpiA/258545‑258823 | taaaaatttgctaaattttgccaatttggtaaaaccgttgtattacatcaggagatatcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa < 2:369980‑M2/10‑1 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:353917‑M2/11‑1 (MQ=255) taaattttgccaatttggtaaaacagttgcatcacaacaagagataacaataacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt > 1:96716‑M2/129‑149 (MQ=255) tgctaagttggtaaaacattggcatcacaccaggagatagcaatgacgttaccgagtgtacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCTATTCTTTTTCGa < 2:469525‑M2/28‑1 (MQ=255) tgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa < 2:417040‑M2/28‑1 (MQ=255) aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGAAAAGATAATCGATTCTTTTTCGATTGt > 1:192828‑M2/118‑149 (MQ=255) aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattaatcaaaaaatttaccgcactaggcccgaatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt > 1:228495‑M2/118‑149 (MQ=255) aggtgggaaaacagttgcatcacaaccggagacagtaatgacgttaccgagtgtacactcgaagagcagatttatcaaataatttaccgcacgaggcccgtatagtaatgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTc > 2:243464‑M2/117‑149 (MQ=255) aacagtggtatcagaacaggacatagcaatgaagttagctaggggaaacccgaagatcagattgatcaaaaaatttaccgcactaggcccgtatattcgttaaggtaAGTGCAAATATAATCGATTCTTTTTCGATTGTCTGGCTGTAt < 2:217401‑M2/42‑1 (MQ=255) ccgctgcatcaccacaggcctgtgcaatgacgttaccgagtggatacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc < 1:233396‑M2/44‑1 (MQ=255) agttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 2:579478‑M2/105‑149 (MQ=255) catcacaacaggagatagcaatgacgttaccgagtggacacccgaaaagcagatagatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCGAc > 1:73992‑M2/100‑149 (MQ=255) tcacaacaggagatagcaatgacgttaccgagtggacacacgaagagcaaattcaacaaaaaattaaccgcaataggcccgtatattcgtaaagaaaAGAGCAAAGATAATCGATTCTTTTTCGATTGTATGGCTGTATGCGTCAACGt > 1:101742‑M2/98‑149 (MQ=255) tcacaacaggagatagcaatgacgttaccgaatggacacccgaagagaagaaataagaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt > 1:104285‑M2/98‑149 (MQ=255) accaggagaaagcaatgacggcaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaaa < 2:1061‑M2/56‑1 (MQ=255) cgttaacgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTTTTTTTCGATTGTTTGGCTGTATGTGTAAAAGTGAAACCGGCACCGGAAGTGCGt < 1:51663‑M2/74‑1 (MQ=255) taccgagtggacacacgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGaa < 2:286390‑M2/77‑1 (MQ=255) agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg < 2:277338‑M2/82‑1 (MQ=255) gtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgg < 1:409644‑M2/83‑1 (MQ=255) ccgaagagcagattgatcaaaaaatttaccacactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCAATTGTCTGGCTGTATGCGTCAACGTGAAAACGGCACCGGAAGCGCGTGAATCATGGGGCgggtg > 2:580488‑M2/59‑149 (MQ=255) cgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATAGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACAGACACCGGAAGTGAGTGAATTCTGGGGCtggtgg > 2:557485‑M2/58‑149 (MQ=255) agagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg < 1:163686‑M2/95‑1 (MQ=255) cagattgaacaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGc < 2:228495‑M2/99‑1 (MQ=255) gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt < 1:333055‑M2/29‑1 (MQ=255) gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt > 2:333055‑M2/49‑77 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTgg > 1:4981‑M2/48‑149 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCAATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTgg > 1:448847‑M2/48‑149 (MQ=255) atcaaaaaatttacctcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTTGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGTACCGGAAGTGCGTGAATATTTGTGCTGGTGGATGGAGCTGGAAgc < 1:243464‑M2/106‑1 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcg > 2:503752‑M2/43‑149 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGa > 1:251671‑M2/38‑149 (MQ=255) tgcattaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt < 1:495237‑M2/120‑1 (MQ=255) ctacgcccgtatatacttgaaggtaAGTTCAAAGATAATCGATTCTTTTTCGATTGTCGGGCTGCATGCCTCAACGCGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc < 2:304733‑M2/124‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTa < 2:251671‑M2/127‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa < 1:503752‑M2/129‑1 (MQ=255) cccgtatattcgtgaaggtaAGGGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCCTTTTTCTTACa < 2:4981‑M2/129‑1 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc > 2:432490‑M2/19‑90 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc < 1:432490‑M2/72‑1 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGCGATGGTCCGGCAGGAATCCCGTTTTACCTACAGTTACCAGttt < 1:577307‑M2/140‑1 (MQ=255) | CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT > NC_000913_3_vch_tpiA/258545‑258823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |