New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2118491 =	NA (NA)	5 (0.160)	5/268	3.6	11.1%	noncoding (26/186 nt)	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_vch_tpiA	2118569 =	40 (1.300)					noncoding (104/186 nt)	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTG  >  NC_000913_3_vch_tpiA/2118424‑2118716                                                                                                                                                   |                                                                                                                                                    tGCCAGGTGAGGCTGCGTTTGTTTTCTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGTCCCTAGCACAGAACTGTAGGA‑CGGATAAGGCGTTCACGCCGCATCAGGCACTGAATGCCGGATGCgg                                                                                                                                                  <  1:523378/149‑2 (MQ=21)       gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGa                                                                                                                                            <  1:353004/149‑1 (MQ=255)       gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGATCCCGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGa                                                                                                                                            >  1:583853/1‑149 (MQ=255)            gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt                                                                                                                                       <  1:401777/149‑1 (MQ=255)            gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGACTACAAGACCCGAGCACAGAACCGTAGGATCGTACAA‑GCACCCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt                                                                                                                                       >  1:14044/1‑149 (MQ=25)                      ttttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTTTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                                             <  1:132888/149‑1 (MQ=255)                      ttttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                                             <  2:578484/149‑1 (MQ=255)                       tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCg                                                                                                                                                   >  1:422133/1‑126 (MQ=255)                       tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCg                                                                                                                                                   <  2:422133/126‑1 (MQ=255)                       tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                                                                                                            >  1:501345/1‑149 (MQ=255)                              gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGt                                                                                                                     >  2:17292/1‑149 (MQ=255)                              gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCAAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGt                                                                                                                     >  1:459139/1‑149 (MQ=255)                              gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAAGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAAGCGTTAAAGCAGCATCCGGCATTCAGTGCCTAATGCGACGCTGAAGCGTCTTATCAGGCCTACAGGt                                                                                                                     >  1:105396/1‑149 (MQ=25)                                    tcTTTTTGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCATGCCGCATCCGGCATTCAGTGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAg                                                                                                               <  1:306889/148‑1 (MQ=255)                                    gCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAg                                                                                                               >  1:272767/1‑149 (MQ=255)                                        tctGCCTGTGGCGACGCTGACGCTGCTGATTGGGGCAACATTACGCGCGCACAGTGCCGTAGTA‑CGGATAAGGCTGTCACGCCGCATCCGTCATCTAGCTGCTGATGCGACGCTGACGCGTCTTATCATGCCTACAGGTCCCGAGcaca                                                                                                           <  2:14044/147‑1 (MQ=12)                                           gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGaa                                                                                                        <  1:410211/149‑1 (MQ=255)                                            ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCTCGAACAAAGAAc                                                                                                       >  1:283231/1‑149 (MQ=255)                                                aTGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCATACAGGTCCCGAGCACAGAACCGTa                                                                                                   <  1:17292/149‑1 (MQ=255)                                                   ctaCGCTGAGGTGTGTTATCAGGTCTACATGACCCGAGAACTGAACCGTAGGA‑CGGATAAGGCGTTTACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGa                                                                                                <  2:495886/147‑1 (MQ=25)                                                         gtcagcgTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTcc                                                                                                                   <  2:137603/120‑1 (MQ=255)                                                           aCGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGATAACGCCGCATCCGGCAATCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCAACAGGTCCCGAGCACAGAACCGTAGGACGGATAAg                                                                                        >  1:557778/1‑149 (MQ=255)                                                                 cTTATCAGGCCTACAAGCCCCGAGCACAGAACCGTAGGG‑AGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGTATAAGGCGttt                                                                                  <  1:116522/149‑1 (MQ=255)                                                                 cTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt                                                                                  >  2:311088/1‑149 (MQ=255)                                                                 cTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt                                                                                  >  2:311344/1‑149 (MQ=255)                                                                      cAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgc                                                                             <  2:50145/149‑1 (MQ=255)                                                                       aGGCCTACAATACCCGAGCACAGCAACGTAGGA‑CGGATAAGGCGTTCATGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgcc                                                                            <  1:105528/149‑1 (MQ=255)                                                                       aGGCCTACAAGCCCCGAGAAGAGAACCGTAAGA‑CGGATAAGGCGTTCACGCCGCATCCTGCATTCAGTGCCTGATGGGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgcc                                                                            <  2:241635/149‑1 (MQ=25)                                                                       aGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCACATCCGGAAATCAGTGCCTGATACAACGCTGACGCGTCTTATCAGTCCTACAGGTCGCGAGCACAGAACCGTAGGCAGAATAAGGCGTTTTAcgcc                                                                            >  1:554642/1‑149 (MQ=37)                                                                              cAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCACATCCGACATTCAGTGCCTGATGCGACTCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCg                                                                     >  1:305117/1‑149 (MQ=255)                                                                               aaGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAg                                                                                                                       <  2:268258/98‑1 (MQ=255)                                                                               aaGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAg                                                                                                                       >  1:268258/1‑98 (MQ=255)                                                                                           caGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACCGAACCGTAGGACGGACACGACCTCTTATGCCGCACCCGGCAACCGTTGTCg                                                        <  2:422858/149‑1 (MQ=25)                                                                                              aaCCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGaa                                                     >  2:74826/1‑149 (MQ=255)                                                                                                ccGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAcc                                                   >  1:130799/1‑149 (MQ=255)                                                                                                            aTAAGGCGTCTACGTCTCAGTCGGGATTCGGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGATGCATAAGGCGTTCGACGCCTCTTCCGGCAATCGTTGTCGGAACCGAAAACAGCaa                                        <  2:225366/149‑1 (MQ=18)                                                                                                                 gCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGTCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAc                                   >  2:373661/1‑149 (MQ=255)                                                                                                                              aTCCGGCATTCAGTGCCTTAGGCGACTCTGACGCGTCTTATCAGGCCTACAGGTCCCTAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGTAATCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTaaaa                      <  1:112022/149‑1 (MQ=25)                                                                                                                                   gCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcatt                 >  2:452487/1‑149 (MQ=255)                                                                                                                                      ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttc              <  1:240196/149‑1 (MQ=255)                                                                                                                                           tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAAAACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatttt         >  1:152260/1‑149 (MQ=255)                                                                                                                                                  tGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCATCTTTCTCCGCCCGTAAAAGCATTTTCATTTTTTCGCTg  <  1:473946/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTG  >  NC_000913_3_vch_tpiA/2118424‑2118716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.