New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3174967	58 (1.220)	4 (0.090)	4/276	6.7	6.9%	noncoding (3174967/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3174976	52 (1.130)					noncoding (3174976/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTTTCAGCACATGCGTCAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCTGCATG  >  NC_000913_3_vch_tpiA/3174828‑3175114                                                                                                                                                       |                                                                                                                                           gCTTTCAGCACATGCGTAAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTCCCGCAAGTGCCGACAACCTG‑‑CAAATCCTGCCCCCTTTCACCCTTTTCcaa                                                                                                                                            >  2:184955/1‑149 (MQ=255)   tttCAGCACATGCGTCAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAgg                                                                                                                                          >  1:592766/1‑149 (MQ=255)    ttCAGCAAATGCATCAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGc                                                                                                                                         <  2:245731/149‑1 (MQ=255)     tCAGCACATGCGTCAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCg                                                                                                                                        >  1:515852/1‑149 (MQ=255)         gacaggggTCAGGCGTGAAAGAGAAAGTGGCGGGCTGTCAAAGAAGGTTTCGTCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGt                                                                                                                                    <  2:79820/142‑1 (MQ=255)         cacaTGCGTCAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGt                                                                                                                                    <  1:39284/149‑1 (MQ=255)                gTCAGGCGTGAAACAGAAAATCGCGAGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACGAGTATTGCGTTTCCAACAAGTGCCG‑C‑GCCTGACCAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAAc                                                                                                                             <  1:830412/149‑1 (MQ=255)                  cAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCt                                                                                                                           <  2:648938/149‑1 (MQ=255)                     gCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTCCAAAGGCGATGTTATAAACCTGAc                                                                                                                        <  1:729659/149‑1 (MQ=255)                        tGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCAt                                                                                                                     <  1:303304/149‑1 (MQ=255)                          aaaCAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATcg                                                                                                                   <  1:653515/149‑1 (MQ=255)                             catgaaaGCGCGGGCAGTCAAAGAAGGTTACATTCTGCCAAAAGTGCACACTGGTACCAGTCTTGCGATTACCGCAAGTGCCGACAACCGC‑‑TACATCCTGCACCTTTTCTCCATTTTCAACGGCGATCTTATCAACTTCACCTTcgcgc                                                                                                                >  2:398102/5‑148 (MQ=255)                                            tGTCAACGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAAGCTG‑‑TCAATCCTGCACCTTTTCGCCATTTGCAAAAGCGTTGTTATAAACCTGGCCATCGCGGCGCACGTTAACTGCt                                                                                                 >  2:664695/1‑149 (MQ=255)                                             gTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTa                                                                                                <  1:525570/149‑1 (MQ=255)                                              ttaaaGAAGGTTTCATCCGGCTAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTAc                                                                                               <  1:299625/147‑1 (MQ=255)                                                  agaagGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACgcgc                                                                                           <  2:515852/149‑1 (MQ=255)                                                    aagGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATGGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCtt                                                                                         <  1:111823/149‑1 (MQ=255)                                                         ttCAGCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGCTTACCGCCAGTGCCGGCAAACTG‑‑TACCTCGTACTCATTTTCACCATTTTACAAGGCGATATTATAAAACTGAGCATCGCGACGCACACTACCTCGTACGCGCTTCcaca                                                                                    >  2:406040/1‑149 (MQ=255)                                                             tCCGTCCAGAAGTGCACACTGGTACCAGTATGTCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGc                                                                                <  2:365300/149‑1 (MQ=255)                                                                   cAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTacc                                                                          >  2:146253/1‑147 (MQ=255)                                                                    aGAAGTGCACACTGGTACCAGTCTTGCGTTTACCGGAAGTGCCGACAACCTG‑‑TAAATCCTGCGCCATTTCGCCATTTTTAAAGGCGATGTTATAAACCTGACCATTCCGGAGCACGTTATCTTCTACGCGCTTCTACAGGGCGTTAacc                                                                         >  2:801858/1‑149 (MQ=255)                                                                     gAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCAACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAccca                                                                        >  2:146723/1‑149 (MQ=255)                                                                      aagtcgacacTGGTACCAGTATTGCGTTTACCGAAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAACGGCGCTGTTATAAACCTGACCATCGCGGCGCACGTTATCTTTTACGCGCTTCGACAGGGCGTTAaccac                                                                       <  2:201598/143‑1 (MQ=255)                                                                      aaGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACATGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAaccac                                                                       <  1:554788/149‑1 (MQ=255)                                                                        gTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCg                                                                     >  2:784336/1‑149 (MQ=255)                                                                         tGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGa                                                                    >  1:497433/1‑149 (MQ=255)                                                                            acacTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAAt                                                                 >  1:161348/1‑149 (MQ=255)                                                                            acacTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAAt                                                                 <  2:644575/149‑1 (MQ=255)                                                                               cTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCGTTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACTCGCTTCGACAGGGCGTTAACCACCGAAATccc                                                              <  2:747668/149‑1 (MQ=255)                                                                               cTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACGACCGAAATccc                                                              >  1:223210/1‑149 (MQ=255)                                                                                  gTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTGACCCCCGAAATCCCCAc                                                           >  1:359228/1‑149 (MQ=255)                                                                                    acgaGTATCGCGTGTCCCGCAAGCGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATTAACCTGACCATCGCGGCGCACGTTAACTTCTATGCGCTTTAACAGGACGGCAACCACCGAGATCCCCACGc                                                         <  2:296849/146‑1 (MQ=255)                                                                                         tgtggtgTTTACAGCAAGTGCCGACAACCTG‑‑TAAATCCTGAACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTCTCCATCGCGGCGCACGTTAACTTCTTTGTTCTTCGACAGGGCGTCAACCACCGAGAGCCCCACGCCATGc                                                    <  2:82525/143‑1 (MQ=255)                                                                                         tATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCt                                                                                                 <  1:388773/104‑1 (MQ=255)                                                                                         tATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCt                                                                                                 >  2:388773/1‑104 (MQ=255)                                                                                             gCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGgc                                                >  2:134586/1‑149 (MQ=255)                                                                                                tttACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAAc                                                                                                                             <  1:112654/69‑1 (MQ=255)                                                                                                tttACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAAc                                                                                                                             >  2:112654/1‑69 (MQ=255)                                                                                                   aCCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCag                                          >  2:579863/1‑149 (MQ=255)                                                                                                     cGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACCCGCTTCGACAGGGCGTTAACCACCGAAATCCCCCCGCCCTGCACGCCGCCagag                                        >  2:514445/1‑149 (MQ=255)                                                                                                      gCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATAGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCCgaga                                       >  1:538590/1‑149 (MQ=255)                                                                                                      gCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGAGGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAgaga                                       >  1:424118/1‑149 (MQ=255)                                                                                                         aGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACt                                    <  1:579863/149‑1 (MQ=255)                                                                                                             ccGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCCTGCAGCCCGCCAGAGAACTTGTa                                >  2:232666/1‑149 (MQ=255)                                                                                                              cGAAAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTaa                               <  2:33928/149‑1 (MQ=255)                                                                                                               gACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCACGCAGGCCGCCAGAGAACTGGTAAt                              >  2:388765/1‑149 (MQ=255)                                                                                                                   aCCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGCCCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAAttttt                          <  1:408095/149‑1 (MQ=255)                                                                                                                     cTG‑‑TAAATCCTGCACTTTGTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAATTTCTATGCTTTTCGATGGTGCGGCGACCACCGAAATCTACACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGt                        <  2:260663/149‑1 (MQ=255)                                                                                                                       g‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGttc                      >  1:111293/1‑148 (MQ=255)                                                                                                                         ttAAATCCGCGACCTGTTCGCCATTTGCAAAGGCGAGGTTATAAACTTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTGACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTa                      <  2:342485/148‑1 (MQ=255)                                                                                                                           aaaTCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTaga                    <  1:388765/149‑1 (MQ=255)                                                                                                                             aTCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAgaga                  >  1:264781/1‑149 (MQ=255)                                                                                                                                         ttCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCtg      <  2:497433/149‑1 (MQ=255)                                                                                                                                            gCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCtgcat   >  1:127508/1‑149 (MQ=255)                                                                                                                                             ccATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCtgcatg  >  2:572518/1‑149 (MQ=255)                                                                                                                                             ccAGTTTAAAAGGCGAGGTTATAAACCTGACCGTCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCtgcatg  <  2:247950/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                           GCTTTCAGCACATGCGTCAGGCGTGAAACAGAAAATCGCGGGCTGTCAAAGAAGGTTTCATCCGGCCAGAAGTGCACACTGGTACCAGTATTGCGTTTACCGCAAGTGCCGACAACCTG‑‑TAAATCCTGCACCTTTTCGCCATTTTCAAAGGCGATGTTATAAACCTGACCATCGCGGCGCACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCTGCATG  >  NC_000913_3_vch_tpiA/3174828‑3175114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.