New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 225281	NA (NA)	6 (0.110)	6/268	7.3	NA	noncoding (225281/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 225293	NA (NA)					noncoding (225293/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

TAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAA  >  NC_000913_3_vch_tpiA/225206‑225361                                                                            |                                                                                 tacgtagCCTAACCGTCGGGACGGCGCCTACCCCTTTGTGATTCATGACTGGGGAGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTCCCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCtg         <  2:535763/146‑1 (MQ=1)        ctaaaCCTTCGGGAGGCCGATTACCACTTTGTGATTCATGTCTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGAGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGaaaa  <  1:74060/146‑1 (MQ=1)                                                                            |                                                                                 TAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAA  >  NC_000913_3_vch_tpiA/225206‑225361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.