New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2731304 =	37 (0.630)	5 (0.090)	5/266	7.8	12.4%	noncoding (2731304/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4035360	NA (NA)					noncoding (4035360/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGATGCTCAAAGAATTAAACTTCGTAATGAATTACGTGTTCACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGT  >  NC_000913_3_vch_tpiA/2731165‑2731451                                                                                                                                            |                                                                                                                                                      tGATGCTCAAAGAATTAAACTTCGTAATGAATTACGTGTTCACTCTTGAGACTTGGTATTCCTATATCGTCTTGAGAGGTGAAGAGTCCGTATCTTCGAGTGCCCACACAGATTGTGTGATAAATTGTTAAAGAGCAGTGCcgcttcgc                                                                                                                                              >  1:247744/1‑149 (MQ=11)                                   cgcgtTCACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTGTGATAAATTGTTAAAGATCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGc                                                                                                           <  1:127821/146‑1 (MQ=0)                                           cttttGGGACTTGGTATTGATTTTTCGGCTTGCGGCGTTAAGACTCCGTATCTTCGAGTGCCCACACTGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGTCTTcaaga                                                                                                   <  2:14292/146‑5 (MQ=1)                                                                     gTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TCTTACTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCttt                                                                        >  1:928074/1‑149 (MQ=255)                                                                        ttGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCCTTTGT‑TTGCTTTcct                                                                     >  2:105645/1‑149 (MQ=16)                                                                          gCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTctct                                                                   <  1:453518/149‑1 (MQ=40)                                                                             aCGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGtt                                                                <  1:225425/149‑1 (MQ=255)                                                                                ttAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGAGTATCT‑TTGCTTTTCTCTGTTgag                                                             >  1:99633/1‑149 (MQ=255)                                                                                       tCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCa                                                      <  1:1028671/149‑1 (MQ=255)                                                                                          gTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAGGCATTTTT‑TTGGTTTTCTCTGTTTAGGTTCTCTGga                                                   >  1:638584/1‑149 (MQ=11)                                                                                                            acaGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc                                 >  1:32694/1‑149 (MQ=255)                                                                                                             caGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTCCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc                                 <  1:200412/149‑1 (MQ=255)                                                                                                                aTTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCCCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAAAACCCCGCCGCCCCGgcggcg                             >  2:986268/1‑149 (MQ=255)                                                                                                                aTTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCATTCCCGCTACAGAGTCAAGCACACATCTCGCCGTTGT‑GGTTGGGATTCTCAGGAGAACCCCGCCGACCCGgcggcg                             >  1:505268/1‑149 (MQ=11)                                                                                                                    tCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACGCCGCCGACCCGGCGGCGTGtt                         >  1:474398/1‑149 (MQ=255)                                                                                                                      tGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTCCAGAGTCAAGCATTTCT‑TTGCTTTTctct                                                                   <  1:885304/105‑1 (MQ=255)                                                                                                                      tGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTctct                                                                   >  2:885304/1‑105 (MQ=255)                                                                                                                        aTAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc                     >  1:708115/1‑149 (MQ=255)                                                                                                                        aTAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc                     >  1:863326/1‑149 (MQ=255)                                                                                                                            aTTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGCGGTGTGCGCTAAACGCCTTCCCGCTCCAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGCCCCGGCGGCGTGTTTGCCgttg                 >  1:823755/1‑149 (MQ=18)                                                                                                                              tGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt               >  1:841970/1‑149 (MQ=255)                                                                                                                               gTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTc              >  2:501025/1‑149 (MQ=255)                                                                                                                               gTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTc              <  2:28172/149‑1 (MQ=255)                                                                                                                                ttAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGTACCCCGCCGCCCCGCCGGCGTGTTTGCCGTTGTTcc             >  2:578904/1‑149 (MQ=255)                                                                                                                                ttAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTcc             >  1:952565/1‑149 (MQ=255)                                                                                                                                ttAAAGAGCAGTGCCGCTTCGC‑TTCTTCTCATCGGCGCGGGGTGTGCATACTTCGCCTTCCCGCTACAGAGTCATGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTTAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTcc             <  2:462721/149‑1 (MQ=18)                                                                                                                                 tAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCg            >  1:4721/1‑149 (MQ=255)                                                                                                                                  tagcagCAGGGCCGCTTGGC‑CTTTTCTCAGCGGTGCGGGGTGTGCACAATTCGCCGTCCCGATATAGAGTCAAGCCTTGAT‑TTGCTTTTCGCTGTTGAGATTCTCAGGAGACCCCCGCCGCCCCGGCGGCGTGTTTGCCGTTGTTCCgt           <  2:23852/145‑1 (MQ=17)                                                                                                                                  aaaGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCgt           <  1:635876/149‑1 (MQ=255)                                                                                                                                      agCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGCACTGTCGTCGTGTTTGCCGTTGTTCCGTGTCa       <  1:1033672/149‑1 (MQ=18)                                                                                                                                      agCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCa       <  2:604657/149‑1 (MQ=255)                                                                                                                                         aGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTTTCAgtg    >  2:545564/1‑149 (MQ=255)                                                                                                                                          gTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGGTTGCCGTTGTTCCGTGTCAttgg   >  2:180914/1‑149 (MQ=255)                                                                                                                                           tGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTCCAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCCCCGTGTTTGCCGTTGCTCCGTGTCAgtgac  >  2:672251/1‑147 (MQ=255)                                                                                                                                           tGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtggt  <  1:101467/149‑1 (MQ=255)                                                                                                                                           tGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtggt  >  2:108282/1‑149 (MQ=255)                                                                                                                                           tGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtggt  <  1:680501/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                      TGATGCTCAAAGAATTAAACTTCGTAATGAATTACGTGTTCACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGC‑TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCT‑TTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGT  >  NC_000913_3_vch_tpiA/2731165‑2731451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.