New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 354733	NA (NA)	4 (0.110)	4/270	5.0	NA	noncoding (135/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_vch_tpiA	= 354765	NA (NA)					noncoding (167/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAA  >  NC_000913_3_vch_tpiA/354623‑354908                                                                                                                                               |                                                                                                                                                cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCTCCTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc                                                                                                                                           >  1:157425/1‑149 (MQ=255)       tgtgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCCCTGtt                                                                                                                                     >  1:654536/1‑149 (MQ=255)         tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtttt                                                                                                                                   >  2:631513/1‑149 (MQ=255)         tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtttt                                                                                                                                   <  2:11258/149‑1 (MQ=255)         tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtttt                                                                                                                                   <  1:252617/149‑1 (MQ=255)           tgCCGACGTCTGGTGCGACGCGGACGCGTTTTATCATGCCTACGGACCTGAACAGCAGGTCGGATAAGGCGCTCGCGTCGCATCCGATACCATGCTTATATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTa                                                                                                                                 <  1:135176/149‑1 (MQ=38)                             cGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGATCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTcccc                                                                                                               >  1:446063/1‑149 (MQ=255)                                      gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCttttt                                                                                                      >  1:423004/1‑149 (MQ=255)                                       ttttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTg                                                                                                     >  1:41565/1‑149 (MQ=255)                                              aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTAGCGTCGCCTCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTAAACCGATAATTTTTCCAACACCTTTTTGCCCtcat                                                                                              >  2:5549/1‑149 (MQ=38)                                                gCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACccattc                                                                                            >  2:104843/1‑149 (MQ=255)                                                    aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                                                                                                  <  1:366930/139‑1 (MQ=255)                                                    aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                                                                                                  >  2:366930/1‑139 (MQ=255)                                                      ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATaa                                                                                      >  1:340706/1‑149 (MQ=255)                                                         ccTGAATCGGAGGTCGTATAAGGCGCTAGCGTCGCATCCGATACTCTGCTCAGATGCCTGATGCGACGCTGACGCGGCTTATCAGGGCGACCCACGTTTTTGACACCGATGATTTTTCCCCCACCTTTTTGCACTCATTCATATaaaaa                                                                                   <  2:482657/149‑1 (MQ=37)                                                           tGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCGCAGATGCCTGATGCGAGGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCTTTCATATAAAAAat                                                                                 >  1:434062/1‑149 (MQ=255)                                                              aCCGTAGGTCGGATAAGGCGCGCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTCATCAGGCCTACCCACTGTGTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatata                                                                              <  2:630564/149‑1 (MQ=255)                                                                          aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGaa                                                                  >  2:491602/1‑149 (MQ=255)                                                                          aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGaa                                                                  >  1:382439/1‑149 (MQ=255)                                                                               gcgcTCGCGTCGTATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCATACCCACGGTTTTTACACCGATAATTGGTCCCCCACCGCCCGCCACCCAGTCATATAAAAAATATATTTCCCCCCCAAAGCGa                                                             >  2:313772/1‑149 (MQ=25)                                                                                cgcTCGCGTCGTATCCGACACCATGCTCAGATGCCTGATGCGACGATGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAt                                                            <  1:313772/149‑1 (MQ=255)                                                                                   gcgccgcGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGc                                                         <  2:337622/143‑1 (MQ=255)                                                                                           cATCCGACATCATGCTCAGATGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATc                                                 <  2:166637/149‑1 (MQ=255)                                                                                             tCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCtt                                               >  1:237564/1‑149 (MQ=255)                                                                                             tCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCtt                                               <  2:382439/149‑1 (MQ=255)                                                                                              tcGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAAACAGTGTTCCCACGAAAACGATTGCTTTTTATCTTc                                              <  2:146240/148‑1 (MQ=38)                                                                                              ccGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTc                                              <  2:276152/149‑1 (MQ=255)                                                                                               cGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa                                             <  1:631513/149‑1 (MQ=255)                                                                                               cGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATAAATTTCCCCACGAAAACGATTGCTTTTTATCTTCa                                             <  1:20313/149‑1 (MQ=255)                                                                                               cGACACCAAGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa                                             <  2:306857/149‑1 (MQ=255)                                                                                                gACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAg                                            >  2:258469/1‑149 (MQ=255)                                                                                                      aTGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACACACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAAt                                      >  1:607666/1‑149 (MQ=255)                                                                                                           cAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATATTCAGATGAATAGAAt                                 >  1:172548/1‑149 (MQ=255)                                                                                                              aTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTAGACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATgcg                              <  2:423004/149‑1 (MQ=255)                                                                                                                          aCGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTg                  <  1:240869/149‑1 (MQ=255)                                                                                                                           cGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTgg                 <  2:607666/149‑1 (MQ=255)                                                                                                                                   cgTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa         <  1:62799/149‑1 (MQ=255)                                                                                                                                    gTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAAc        >  2:394794/1‑149 (MQ=255)                                                                                                                                     tCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACa       <  1:520307/149‑1 (MQ=255)                                                                                                                                         aTCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAACCGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTGGGGTTTCAAACAGCaa   >  2:494799/1‑149 (MQ=255)                                                                                                                                          tCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCcaa  >  1:76367/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                CGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAA  >  NC_000913_3_vch_tpiA/354623‑354908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.