| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,727,046 | 0 | A | C | 45.5% | ‑6.2 / 10.3 | 12 | noncoding (2139/2904 nt) | rrlG | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (2/4); new base C (5/0); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.06e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTCTTTCCGTCTTGCC > NC_000913/2726918‑2727137 | ttgggaggaGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAAGTTGCCAGGGTGGTATTTCAAGGATGGCTCCATGAGAACTGGCGTCCCCACTTCAAAGcc > 1:1061390/4‑141 (MQ=0)ttgggaggaGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAAGTTGCCAGGGTGGTATTTCAAGGATGGCTCCATGAGAACTGGCGTCCCCACTTCAAAGcc > 1:1758657/4‑141 (MQ=0)ttgggaggaGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAAGTTGCCAGGGTGGTATTTCAAGGATGGCTCCATGAGAACTGGCGTCCCCACTTCAAAGcc > 1:1758665/4‑141 (MQ=0)ttgggaggaGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAAGTTGCCAGGGTGGTATTTCAAGGATGGCTCCATGAGAACTGGCGTCCCCACTTCAAAGcc > 1:199549/4‑141 (MQ=0)ttgggaggaGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAAGTTGCCAGGGTGGTATTTCAAGGATGGCTCCATGAGAACTGGCGTCCCCACTTCAAAGcc > 1:479972/4‑141 (MQ=0)ttgggaggaGACCGCCCCAGTCAAACTACCCACCATACACAGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAAGTTGCCAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGcc > 1:515914/4‑141 (MQ=0) cactCACACTACCCACCAGACACTGTCCGCACCCCGGATTACCGGTCAACGAAAGAACAACACACAATAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCTAACTTCAAAGCGTCCCACCTATCCTacac < 2:74030/138‑1 (MQ=1) gtaaaaCTACCCACCAGACACTGTAATAAACACAGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACCTATCCTACACAt > 2:272214/4‑141 (MQ=1) acgaCCCCCCAGACACTGTCCGCAACCCGGATTACGGGTCACCGATAGAACAACACCCATTCACGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACGTCTCCTACACATCAAgg < 2:1661151/138‑1 (MQ=1) cccccaGACCCCGTCCGCAACCCGGATGACGGGACAACCTGCGAACCTCACCCAAGACCGGGTGGAAGTACAAGGTCGGCTCCATGCAGACTGGCGTCCACACTACAAAGCGTCCCCCCTTTCCTACACATCAAGGCTCaa < 2:593674/138‑1 (MQ=0) cccccaGACACTGTCCGCAACCCGCATTACGGGTCAACGTTAGAACATCAACCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAACGCCTCCCACCTATCCTACACATCAAGGCTCaa < 2:596885/138‑1 (MQ=0) accaatAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTCTTTCCGTCTTGcc < 1:140884/136‑1 (MQ=1) | TTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTCTTTCCGTCTTGCC > NC_000913/2726918‑2727137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |