Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1889737 179484 SNP T→C
CJ019_00182
 hypothetical protein C316R (TGC→CGC)
1889738 690144 SNP A→G
bauC, PP_RS08750
 Putative 3-oxopropanoate dehydrogenase/tRNA-Val intergenic (+21/‑2438)
1889739 2191046 INS +CTGAAAATATCTCTTAT
PP_RS10045, purU_3
 LysR family transcriptional regulator/Formyltetrahydrofolate deformylase intergenic (‑1/‑313)
1889740 4257335 INS +GCGGCCGC
CJ019_03991, CJ019_03994
 putative ABC transporter ATP-binding protein/hypothetical protein intergenic (‑281/+7)
1889741 5386500 SNP C→A
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑509/+1142)
1889742 5386503 SNP C→G
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑512/+1139)
1889744 5386507 INS +C
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑516/+1135)
1889746 5386513 INS +AA
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑522/+1129)
1889747 5386514 SNP T→C
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑523/+1128)
1889748 5386517 SNP G→C
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑526/+1125)
1889749 5386519 SNP G→A
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑528/+1123)
1889750 5386811 SNP C→T
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑820/+831)
1889751 5391707 INS +54 bp
ligH, CJ019_05072
 10-formyltetrahydrofolate synthetase/hypothetical protein intergenic (+124/‑1253)
1889755 465344 SNP C→T
rpoD
 RNA polymerase sigma factor RpoD G214D (GGC→GAC)
1889772 3440326 SNP A→C
CJ019_03266
 hypothetical protein S18R (AGC→CGC)
1889787 5049836 INS (G)8→9
hcnB
 Hydrogen cyanide synthase subunit HcnB coding (1335/1395 nt)
1889801 504981 SNP T→A
trpC, CJ019_00453
 Indole-3-glycerol phosphate synthase/hypothetical protein intergenic (+71/‑77)
1889802 627228 SNP T→G
acoR_1
 Acetoin catabolism regulatory protein S162A (TCG→GCG)
1889803 627234 SNP A→C
acoR_1
 Acetoin catabolism regulatory protein S164R (AGC→CGC)
1889808 1312115 SNP C→T
aaeA_2
 p-hydroxybenzoic acid efflux pump subunit AaeA Q96* (CAA→TAA)
1889811 1639779 SNP T→G
gcd
 Quinoprotein glucose dehydrogenase N212H (AAC→CAC)
1889814 2094808 SNP A→C
CJ019_01995
 hypothetical protein L186R (CTG→CGG)
1889815 2094817 SNP T→G
CJ019_01995
 hypothetical protein Q183P (CAG→CCG)
1889822 3440331 SNP T→G
CJ019_03266
 hypothetical protein A19A (GCT→GCG)
1889824 4159020 SNP T→G
proP_4
 Proline/betaine transporter K237T (AAG→ACG)
1889825 4245128 SNP A→C
CJ019_03982
 Crotonyl-CoA hydratase L178R (CTG→CGG)
1889826 4257334 INS +CGCGGCCG
CJ019_03991, CJ019_03994
 putative ABC transporter ATP-binding protein/hypothetical protein intergenic (‑280/+8)
1889849 5096415 SNP C→G
CJ019_04792, CJ019_04793
 Putative pterin-4-alpha-carbinolaminedehydratase/hypothetical protein intergenic (+28/‑162)
1889850 5300670 SNP T→G
recC, PP_RS08750
 RecBCD enzyme subunit RecC/tRNA-Val intergenic (‑100/+3473)
1889851 5345373 SNP A→T
pnp
 Polyribonucleotide nucleotidyltransferase L688Q (CTG→CAG)
1889852 5386512 INS +AA
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑521/+1130)
1889855 5507093 SNP T→G
CJ019_05179
 hypothetical protein L36R (CTC→CGC)
1889856 5693153 SNP T→G
pyrC'
 Dihydroorotase-like protein R228R (CGT→CGG)
1889857 5693175 SNP A→C
pyrC'
 Dihydroorotase-like protein S236R (AGC→CGC)
1889858 5693183 SNP T→G
pyrC'
 Dihydroorotase-like protein R238R (CGT→CGG)
1889861 6129757 SNP A→T
copA_4
 Copper resistance protein A H430Q (CAT→CAA)
1889866 570448 SNP A→C
fdoG_2
 Formate dehydrogenase-O major subunit D599A (GAC→GCC)
1889870 935998 SNP A→C
CJ019_00881
 hypothetical protein F892V (TTC→GTC)
1889875 1630540 SNP A→C
czcS
 Sensor protein CzcS L419R (CTG→CGG)
1889877 1686855 SNP C→G
CJ019_01584
 hypothetical protein L90V (CTG→GTG)
1889878 1986661 SNP A→C
mshA_1, CJ019_01891
 D-inositol-3-phosphate glycosyltransferase/hypothetical protein intergenic (+42/+56)
1889880 2041924 SNP T→G
yfcG_2, CJ019_01936
 Disulfide-bond oxidoreductase YfcG/hypothetical protein intergenic (+106/+33)
1889883 2491259 SNP A→C
iutA
 Ferric aerobactin receptor A34A (GCA→GCC)
1889885 2737398 SNP G→C
CJ019_02580
 hypothetical protein Q241H (CAG→CAC)
1889889 3267793 SNP T→G
eamA
 putative amino-acid metabolite efflux pump L171V (TTG→GTG)
1889890 3427762 SNP T→G
CJ019_03251
 hypothetical protein F77V (TTC→GTC)
1889892 3784646 SNP T→G
dmdC_4
 3-methylmercaptopropionyl-CoA dehydrogenase D571A (GAC→GCC)
1889895 3969743 SNP A→C
CJ019_03750
 putative protein A251A (GCT→GCG)
1889898 4135590 SNP A→C
tgnC
 (Z)-2-((N-methylformamido)methylene)-5-hydroxybu tyrolactone dehydrogenase Q32P (CAG→CCG)
1889909 5507090 SNP T→G
CJ019_05179
 hypothetical protein L35R (CTG→CGG)
1890003 3986605 SNP T→G
CJ019_03763
 hypothetical protein D31A (GAT→GCT)
1890068 343673 SNP T→C
hisH
 Imidazole glycerol phosphate synthase subunitHisH G12G (GGT→GGC)
1890069 358766 SNP C→T
CJ019_00331, cdhR_2
 hypothetical protein/HTH-type transcriptional regulator CdhR intergenic (‑115/‑30)
1890070 456874 SNP T→C
iaaM
 Tryptophan 2-monooxygenase M425V (ATG→GTG)
1890071 586555 SNP A→C
ompW
 Outer membrane protein W V212G (GTC→GGC)
1890072 841643 SNP G→T
CJ019_00805
 hypothetical protein H609N (CAT→AAT)
1890074 910666 SNP A→G
CJ019_00872, oprD_4
 hypothetical protein/Porin D intergenic (‑50/+149)
1890078 1754756 SNP A→G
CJ019_01665
 hypothetical protein K287R (AAG→AGG)
1890079 2142770 INS (TCGATCTGGCTT)1→2
rne
 Ribonuclease E coding (807/3276 nt)
1890081 2390993 SNP T→G
bvgS
 Virulence sensor protein BvgS E566D (GAA→GAC)
1890084 2775009 SNP C→T
iscS_2
 Cysteine desulfurase IscS A112T (GCC→ACC)
1890086 2908411 SNP A→G
CJ019_02759
 hypothetical protein Y1464C (TAC→TGC)
1890090 3360157 SNP C→T
CJ019_03160
 Tn3 family transposase ISPa42 I138I (ATC→ATT)
1890091 3815010 SNP G→A
ttuB_3
 Putative tartrate transporter A405V (GCG→GTG)
1890092 4003911 SNP G→A
pobA
 p-hydroxybenzoate hydroxylase R113C (CGC→TGC)
1890096 4640631 SNP A→G
bicA
 Bicarbonate transporter BicA V30A (GTG→GCG)
1890101 4955371 SNP G→A
atoC_3
 Regulatory protein AtoC P128L (CCG→CTG)
1890103 5096422 SNP C→A
CJ019_04792, CJ019_04793
 Putative pterin-4-alpha-carbinolaminedehydratase/hypothetical protein intergenic (+35/‑155)
1890105 5245005 SNP C→A
gltC_4
 HTH-type transcriptional regulator GltC L177M (CTG→ATG)
1890106 5327077 SNP T→C
sasA_18
 Adaptive-response sensory-kinase SasA L63P (CTG→CCG)
1890107 5328860 SNP G→A
sasA_18
 Adaptive-response sensory-kinase SasA W657* (TGG→TGA)
1890109 5390208 SNP G→A
ligH
 10-formyltetrahydrofolate synthetase G101D (GGC→GAC)
1890116 5994584 SNP G→A
CJ019_05610
 Arylesterase G220G (GGC→GGT)
1890124 169705 SNP A→C
PP_RS08750, fhuA_1
 tRNA-Val/Ferrichrome outer membrane transporter/phagereceptor intergenic (+669/+3018)
1890144 740674 SNP T→G
CJ019_00704
 hypothetical protein L38R (CTG→CGG)
1890145 759412 SNP C→G
mmuM_1, CJ019_00729
 Homocysteine S-methyltransferase/L-methionine gamma-lyase intergenic (+21/‑147)
1890156 1721874 SNP A→C
CJ019_01617
 hypothetical protein W97G (TGG→GGG)
1890158 1834850 SNP T→G
ldhA
 D-lactate dehydrogenase D57A (GAC→GCC)
1890159 1834908 SNP T→G
ldhA
 D-lactate dehydrogenase T38P (ACC→CCC)
1890162 2094790 SNP A→C
CJ019_01995
 hypothetical protein V192G (GTG→GGG)
1890167 2386955 SNP T→G
CJ019_02252, dacC_1
 hypothetical protein/D-alanyl-D-alanine carboxypeptidase DacC intergenic (+41/+65)
1890170 2725622 SNP T→G
polB
 DNA polymerase II V640G (GTG→GGG)
1890180 4654515 SNP A→C
nuoG
 NADH-quinone oxidoreductase subunit G T594P (ACC→CCC)
1890186 4772546 SNP T→G
grsB, lgrB_1
 Gramicidin S synthase 2/Linear gramicidin synthase subunit B intergenic (‑140/+21)
1890192 4805237 SNP A→C
dsbG, CJ019_04513
 Thiol:disulfide interchange protein DsbG/hypothetical protein intergenic (+164/‑585)
1890196 4841928 SNP G→C
CJ019_04539, hemN
 hypothetical protein/Oxygen-independent coproporphyrinogen IIIoxidase intergenic (+17/‑89)
1890197 4844971 SNP T→G
apt, recR
 Adenine phosphoribosyltransferase/Recombination protein RecR intergenic (+47/+72)
1890202 4927190 SNP T→G
srp54
 Signal recognition particle 54 kDa protein Q192P (CAG→CCG)
1890205 5390260 INS +GTGCCGATGGA
ligH
 10-formyltetrahydrofolate synthetase coding (354/1666 nt)
1890505 5390915 INS (GCTCA)1→2
ligH
 10-formyltetrahydrofolate synthetase coding (1009/1666 nt)
1890513 1141856 SNP C→G
CJ019_01079
 hypothetical protein D97H (GAC→CAC)
1890527 3214279 SNP G→A
CJ019_03017
 hypothetical protein I474I (ATC→ATT)
1890532 3900666 SNP C→T
CJ019_03690
 hypothetical protein A508V (GCC→GTC)
1890539 5507078 SNP A→C
CJ019_05179
 hypothetical protein E31A (GAG→GCG)
1890540 1310041 INS (C)5→6
aaeB_2
 p-hydroxybenzoic acid efflux pump subunit AaeB coding (406/1989 nt)
2132559 44301 DEL (T)9→8
oprD_1, czcR_2
 Porin D/Transcriptional activator protein CzcR intergenic (+132/‑359)
2132560 120983 DEL (T)9→8
polA, engB
 DNA polymerase I/putative GTP-binding protein EngB intergenic (+280/+92)
2132561 5386506 SUB 1 bp→GT
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑515/+1136)
2132562 5386510 SUB 2 bp→TA
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑519/+1131)
2132563 5760598 DEL (A)6→5
CJ019_05400
 hypothetical protein coding (781/834 nt)
2132565 3459881 SNP T→G
CJ019_03284
 hypothetical protein A20A (GCA→GCC)
2132566 3459888 SNP G→C
CJ019_03284
 hypothetical protein A18G (GCC→GGC)
2132567 5386505 INS +GTACGGTA
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑514/+1137)
2132568 5386508 DEL Δ2 bp
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑517/+1133)
2132569 5386511 DEL Δ2 bp
CJ019_05070, nptII
 hypothetical protein/neomycin phosphotransferase intergenic (‑520/+1130)
2132570 5507081 SNP A→C
CJ019_05179
 hypothetical protein Q32P (CAG→CCG)
2132574 2142779 INS (CTTTCGATCTGG)1→2
rne
 Ribonuclease E coding (798/3276 nt)
2132576 2287056 SNP C→G
CJ019_02168, CJ019_02169
 hypothetical protein/hypothetical protein intergenic (+11/‑5)
2132577 2287059 INS +C
CJ019_02168, CJ019_02169
 hypothetical protein/hypothetical protein intergenic (+14/‑2)
2132578 2287064 SNP C→G
CJ019_02169
 hypothetical protein R2G (CGG→GGG)
2132579 2858514 SNP C→G
nicP_5, galA
 Porin-like protein NicP/Gallate dioxygenase intergenic (‑92/+40)
2132580 1311107 DEL Δ1 bp
aaeB_2
 p-hydroxybenzoic acid efflux pump subunit AaeB coding (1472/1989 nt)
2132581 1311108 DEL Δ1 bp
aaeB_2
 p-hydroxybenzoic acid efflux pump subunit AaeB coding (1473/1989 nt)
2132583 5390023 DEL Δ1 bp
ligH
 10-formyltetrahydrofolate synthetase coding (117/1666 nt)
2132586 2093015 SNP T→G
rcsC_3, CJ019_01993
 Sensor histidine kinase RcsC/hypothetical protein intergenic (‑69/‑136)
2132589 5155849 SNP G→T
CJ019_04852, CJ019_04853
 hypothetical protein/Beta-ketodecanoyl-[acyl-carrier-protein]synthase intergenic (+53/+148)
2132590 5155852 SNP T→C
CJ019_04852, CJ019_04853
 hypothetical protein/Beta-ketodecanoyl-[acyl-carrier-protein]synthase intergenic (+56/+145)
2132591 2944370 SNP T→G
CJ019_02781, CJ019_02782
 8-oxoguanine deaminase/Alpha-ketoglutaric semialdehyde dehydrogenase intergenic (‑109/+52)
2132592 2944379 SNP C→G
CJ019_02781, CJ019_02782
 8-oxoguanine deaminase/Alpha-ketoglutaric semialdehyde dehydrogenase intergenic (‑118/+43)
2132593 2944383 SNP A→G
CJ019_02781, CJ019_02782
 8-oxoguanine deaminase/Alpha-ketoglutaric semialdehyde dehydrogenase intergenic (‑122/+39)
2132594 2944388 SNP C→G
CJ019_02781, CJ019_02782
 8-oxoguanine deaminase/Alpha-ketoglutaric semialdehyde dehydrogenase intergenic (‑127/+34)
2132595 2944391 SNP A→T
CJ019_02781, CJ019_02782
 8-oxoguanine deaminase/Alpha-ketoglutaric semialdehyde dehydrogenase intergenic (‑130/+31)
2132596 2944393 SNP A→G
CJ019_02781, CJ019_02782
 8-oxoguanine deaminase/Alpha-ketoglutaric semialdehyde dehydrogenase intergenic (‑132/+29)
2132597 5389996 DEL Δ8 bp
ligH
 10-formyltetrahydrofolate synthetase coding (90‑97/1666 nt)
2132598 5917409 SNP C→G
CJ019_05537
 hypothetical protein R267R (CGC→CGG)
2132600 4444428 SNP T→G
nicB
 Nicotinate dehydrogenase subunit B V812G (GTG→GGG)
2132606 5115152 SNP A→C
CJ019_04811
 hypothetical protein L306R (CTG→CGG)
2132607 5451813 SNP T→G
CJ019_01212
 IS110 family transposase ISPpu9 L429L (CTT→CTG)
2132608 5451816 SNP C→A
CJ019_01212
 IS110 family transposase ISPpu9 R430R (CGC→CGA)
2132609 5451819 SNP A→C
CJ019_01212
 IS110 family transposase ISPpu9 K431N (AAA→AAC)
2132610 2031417 DEL (G)10→9
wecB
 UDP-N-acetylglucosamine 2-epimerase coding (1120/1143 nt)
2132611 3130824 DEL (T)9→8
livF_3, oprD_7
 High-affinity branched-chain amino acidtransport ATP-binding protein LivF/Porin D intergenic (+212/‑78)
2132612 4575178 DEL (G)11→10
CJ019_04328, glgE2
 Glucosamine kinase/Alpha-1,4-glucan:maltose-1-phosphatemaltosyltran s ferase 2 intergenic (‑154/+17)
2132614 5009222 DEL (A)11→10
CJ019_04705, spuC_5
 hypothetical protein/Putrescine--pyruvate aminotransferase intergenic (‑166/+68)
2132615 4665154 SNP G→C
btuB_4
 Vitamin B12 transporter BtuB A109A (GCG→GCC)
2132619 1537464 SNP T→G
mdfA
 Multidrug transporter MdfA G404G (GGT→GGG)
2132621 2858520 SNP A→G
nicP_5, galA
 Porin-like protein NicP/Gallate dioxygenase intergenic (‑98/+34)
2132623 1833136 SNP C→G
resA_1, CJ019_01751
 Thiol-disulfide oxidoreductase ResA/hypothetical protein intergenic (+12/+24)
2132626 2856869 SNP T→G
hdfR_4
 HTH-type transcriptional regulator HdfR S297A (TCG→GCG)
2132627 4845770 SUB 2 bp→GC
recR, ybaB
 Recombination protein RecR/Nucleoid-associated protein YbaB intergenic (‑125/+171)
2132628 4971886 INS (C)8→9
flgH
 Flagellar L-ring protein coding (30/696 nt)
2132629 5456745 SNP T→G
lptE, holA
 LPS-assembly lipoprotein LptE/DNA polymerase III subunit delta intergenic (+18/‑22)
2132633 5128305 SNP T→G
CJ019_04823, aer_3
 hypothetical protein/Aerotaxis receptor intergenic (‑47/+18)
2132635 641297 SNP A→C
acoR_2, accC
 Acetoin catabolism regulatory protein/Biotin carboxylase intergenic (+16/+75)
2132636 3866425 SNP A→C
sasA_14
 Adaptive-response sensory-kinase SasA V448G (GTG→GGG)
2132638 4801701 AMP 44,000 bp x 3
dsbD_2,resA_2,dsbG,CJ019_04513,CJ019_04514,mcbC,mcbD,CJ019_04517,tupC,CJ019_04519,lgrB_2,CJ019_04521,CJ019_04522,CJ019_04523,dinG_4,ppnP,CJ019_04526,ccoN1_1,CJ019_04528,CJ019_04529,ccoP2_1,ccoN1_2,CJ019_04532,CJ019_04533,ccoP2_2,CJ019_04535,CJ019_04536,copA_3,CJ019_04538,CJ019_04539,hemN,anr,apt,recR
 dsbD_2,resA_2,dsbG,CJ019_04513,CJ019_04514,mcbC,mcbD,CJ019_04517,tupC,CJ019_04519,lgrB_2,CJ019_04521,CJ019_04522,CJ019_04523,dinG_4,ppnP,CJ019_04526,ccoN1_1,CJ019_04528,CJ019_04529,ccoP2_1,ccoN1_2,CJ019_04532,CJ019_04533,ccoP2_2,CJ019_04535,CJ019_04536,copA_3,CJ019_04538,CJ019_04539,hemN,anr,apt,recR amplification
2132639 4846001 AMP 4,800 bp x 3
ybaB,ruvB_2,CJ019_04546,CJ019_04547,CJ019_04549,CJ019_04550
 [ybaB],ruvB_2,CJ019_04546,CJ019_04547,CJ019_04549,[CJ019_04550] amplification
2132640 5331374 SNP C→G
zraR, pcnB
 Transcriptional regulatory protein ZraR/Poly(A) polymerase I intergenic (+62/‑718)
2132641 5009212 DEL Δ1 bp
CJ019_04705, spuC_5
 hypothetical protein/Putrescine--pyruvate aminotransferase intergenic (‑156/+78)
2132646 5155845 SNP C→G
CJ019_04852, CJ019_04853
 hypothetical protein/Beta-ketodecanoyl-[acyl-carrier-protein]synthase intergenic (+49/+152)
2132648 4901237 DEL (CCGTTG)5→4
CJ019_04595
 hypothetical protein coding (99‑104/198 nt)
2132649 1740407 SNP T→G
CJ019_01643
 hypothetical protein E53A (GAG→GCG)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details