Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
12 12 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 1036 1210
Multiple Base Substitutions 2 2
Deletions 77 165
Insertions 120 181
Mobile Element Insertions 3 14
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 1238 1572

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 140 0 77.1 2730754 94.9% 2591485 138.5
A2 F28 I1 R1 142 0 96.2 3256224 98.9% 3220405 138.8
A3 F28 I1 R1 161 0 50.8 1735388 98.6% 1711092 138.7
A4 F28 I1 R1 100 0 74.7 2540932 99.2% 2520604 138.7
A5 F28 I1 R1 157 0 47.3 1607120 99.4% 1597477 138.5
A6 F28 I1 R1 140 0 59.4 2004938 99.3% 1990903 138.6
A7 F28 I1 R1 148 0 57.0 1973990 96.6% 1906874 138.7
A8 F28 I1 R1 95 0 36.3 1231394 98.7% 1215385 138.7
A9 F28 I1 R1 139 0 53.6 1844736 98.1% 1809686 138.7
A10 F28 I1 R1 100 0 50.0 1731240 97.4% 1686227 138.6
A11 F28 I1 R1 132 0 43.0 1464274 99.1% 1451095 138.7
A12 F28 I1 R1 118 0 32.6 1094092 99.3% 1086433 139.2

Mutation Needle Plot

Mutation Targets

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