mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 52.6% | ‑3.8 / 23.0 | 19 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 887,392 | 0 | T | A | 26.5% | 53.9 / 20.5 | 35 | intergenic (‑53/‑31) | ybjJ/rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| * | NC_000913 | 887,393 | 0 | T | A | 25.7% | 55.1 / 20.8 | 35 | intergenic (‑54/‑30) | ybjJ/rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| * | NC_000913 | 3,918,291 | 0 | C | T | 21.4% | 52.3 / 10.2 | 28 | intergenic (‑26/+25) | atpG/atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3376260 | 29 (0.940) | 5 (0.180) | 5/248 | 2.9 | 15.3% | intergenic (+24/+19) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor |
| ? | NC_000913 | = 3376265 | 29 (1.030) | intergenic (+29/+14) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor | |||||
| * | ? | NC_000913 | 580753 = | 25 (0.810) | 4 (0.150) | 4/240 | 3.1 | 14.0% | intergenic (‑308/‑81) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 580810 = | 27 (0.990) | intergenic (‑365/‑24) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | = 4298625 | 28 (0.900) | 4 (0.140) | 4/256 | 3.3 | 13.0% | coding (742/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | NC_000913 | = 4298645 | 27 (0.930) | coding (722/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit | |||||
| * | ? | NC_000913 | 3935137 = | 34 (1.100) | 4 (0.140) | 4/256 | 3.3 | 11.0% | coding (1360/1506 nt) | rbsA | D‑ribose ABC transporter ATPase |
| ? | NC_000913 | 3935197 = | 33 (1.130) | coding (1420/1506 nt) | rbsA | D‑ribose ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 3859821 | 80 (2.580) | 4 (0.140) | 4/258 | 3.3 | 4.9% | coding (296/1716 nt) | yidK | putative transporter |
| ? | NC_000913 | = 3859827 | 79 (2.690) | coding (290/1716 nt) | yidK | putative transporter | |||||
| * | ? | NC_000913 | = 3857685 | 82 (2.640) | 4 (0.140) | 4/256 | 3.3 | 5.2% | coding (720/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3857715 | 70 (2.400) | coding (690/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | 3305526 = | 20 (0.640) | 4 (0.140) | 4/258 | 3.3 | 16.0% | coding (292/1245 nt) | mtr | tryptophan transporter of high affinity |
| ? | NC_000913 | 3305567 = | 23 (0.780) | coding (251/1245 nt) | mtr | tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | = 2847217 | 30 (0.970) | 4 (0.140) | 4/256 | 3.3 | 13.1% | coding (196/924 nt) | hycD | hydrogenase 3, membrane subunit |
| ? | NC_000913 | = 2847253 | 25 (0.860) | coding (160/924 nt) | hycD | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | = 1054170 | 31 (1.000) | 4 (0.140) | 4/254 | 3.3 | 12.7% | coding (2009/2745 nt) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| ? | NC_000913 | = 1054208 | 26 (0.900) | coding (1971/2745 nt) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR | |||||
| * | ? | NC_000913 | 3559520 = | 21 (0.680) | 4 (0.130) | 4/262 | 3.4 | 19.4% | coding (1253/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 | 3559558 = | 13 (0.440) | coding (1291/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||